PROJECT INFORMATION
GOLD Project ID
Gp0085286  
Project Name
Dehalogenimonas alkenigignens IP3-3  
Other Names
  
Legacy ER Project ID
69567  
Legacy GOLD ID
Gi0069567  
NCBI BioProject Name Dehalogenimonas alkenigignens strain:IP3-3
NCBI BioProject Accession PRJNA261058
NCBI Locus Tag
DEALK  
NCBI BioSample Accession SAMN03068710
PI William Moe
Added By Trent Key on 2014-02-06
Last Modified By Hema Katta on 2019-01-04
Project Comments
  
Project Status
Complete and Published  
Project Relevance Comparative analysis
Tree of Life
Environmental
Bioremediation
Sequencing Center Chunlab, Inc (International)
Collaborating Institute Louisiana State University
Funding Agency
  
Project Description
A strictly-anaerobic isolate that reductively dehalogenates polychlorinated alkanes  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Standards in genomic sciences Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)).

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Dehalogenimonas alkenigignens IP3-3
Organism Dehalogenimonas alkenigignens IP3-3
Analysis Projects Dehalogenimonas alkenigignens IP3-3
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina MiSeq
Library Method (MIGS-28)
454 standard and paired-end protocols, Illumina TruSeq DNA sample preparation protocol  
Library Layout
  
Library Screening Method
  
Number Of Reads
234,711 (454 Titanium standard library), 238,686 (454 Titanium paired-end), 7,147,715 (Illumina)  
Read Size
333.77 nt (454 Titanium standard library), 231.39 nt (454 Titanium paired-end), 151.01 (Illumina)  
Vector
  
GC Percent
56  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0085286
Organism Name
Dehalogenimonas alkenigignens IP3-3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROFLEXI  
Genus
Dehalogenimonas  
Genus Synonyms
  
Species
Dehalogenimonas alkenigignens  
Subspecies
  
Species Synonyms
  
Strain
IP3-3  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.24050  
Exemplar Name
Dehalogenimonas alkenigignens  
Taxon DOI
10.1601/tx.24050  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1217799
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chloroflexi  
NCBI Class
Dehalococcoidia  
NCBI Order
  
NCBI Family
  
NCBI Genus
Dehalogenimonas  
NCBI Species
Dehalogenimonas alkenigignens  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccoid  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Contaminated water
Groundwater
Metabolisms Dehalogenation
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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