Studies
|
52,461 |
|
Biosamples
|
170,231 |
|
Sequencing Projects
|
472,496 |
|
Analysis Projects
|
343,314 |
| Organisms | 459,868 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0075830
|
|
Project Name
|
Afipia sp. P52-10
|
|
Other Names
|
|
|
Legacy ER Project ID
|
64710
|
|
Legacy GOLD ID
|
Gi0064710
|
| NCBI BioProject Name | Afipia sp. P52-10 |
|
NCBI BioProject Accession
|
PRJNA230052 |
|
NCBI Locus Tag
|
X566
|
|
NCBI BioSample Accession
|
SAMN02422547 |
| PI | |
| Added By |
JGI automated process
on 2014-01-14 |
| Last Modified By |
JGI automated process
on 2014-03-26 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Medical |
|
Sequencing Center
|
Public Health Agency of Canada
(Canada)
|
|
Collaborating Institute
|
|
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Funding Agency
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|
|
Project Description
|
An old world fruit bat Pteropus giganteus, held in captivity suffering from necrosis of its wing, failed to respond to antibiotic therapy forcing two amputations to alleviate the infection. Old world bats carry many disease particularly deadly viral diseases. This work investigates the pathogen responsible for infection, including identification of a novel bacterial species belonging to the genera Afipia.
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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|
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Unassigned Publications
|
PloS one
10(4):e0121274
Identification of a novel Afipia species isolated from an Indian flying fox.
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Afipia sp. P52-10 |
| Organism |
Afipia sp. P52-10 |
| Analysis Projects |
Afipia sp. P52-10 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
|
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Contamination Screening Input
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|
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DNA Amplification Method
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|
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Single Cell Lysis Protocol
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|
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Single Cell Lysis Approach
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|
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Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
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Sequencing Technology
(MIGS-29)
|
Illumina MiSeq |
|
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
63
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| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0075830 |
| Organism Name |
Afipia sp. P52-10
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
Afipia
|
| Genus Synonyms |
|
| Species |
Afipia sp. P52-10
|
| Subspecies |
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| Species Synonyms |
|
| Strain |
P52-10
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
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| Type Strain |
Unknown
|
| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1429916 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Hyphomicrobiales
|
| NCBI Family |
Bradyrhizobiaceae
|
| NCBI Genus |
Afipia
|
| NCBI Species |
Afipia sp. P52-10
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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