PROJECT INFORMATION
GOLD Project ID
Gp0075750  
Project Name
Xylanimicrobium pachnodae JCM 13526, NBRC 107786  
Other Names
  
Legacy ER Project ID
64630  
Legacy GOLD ID
Gi0064630  
NCBI BioProject Name Xylanimicrobium pachnodae JCM 13526 = NBRC 107786
NCBI BioProject Accession PRJDB1331
NCBI Locus Tag
XPA01S  
NCBI BioSample Accession SAMD00047215
PI
Added By JGI automated process on 2014-01-14
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding the structure and evolution of microbial genomes. One of our goals is to sequence 2,000 representative strains in the NBRC culture collection. The sequence information will be released to the society through the NBRC web site (http://www.bio.nite.go.jp/ngac/e/project_wgs-e.html) and DDBJ/EMBL/GeneBank databases.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Xylanimicrobium pachnodae JCM 13526, NBRC 107786
Organism Xylanimicrobium pachnodae JCM 13526, NBRC 107786
Analysis Projects Xylanimicrobium pachnodae JCM 13526, NBRC 107786
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 1000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0075750
Organism Name
Xylanimicrobium pachnodae JCM 13526, NBRC 107786  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Xylanimicrobium  
Genus Synonyms
  
Species
Xylanimicrobium pachnodae  
Subspecies
  
Species Synonyms
  
Strain
JCM 13526, NBRC 107786  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 13526  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6176  
Exemplar Name
Xylanimonas pachnodae  
Taxon DOI
10.1601/tx.36819  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1305855
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinomycetia  
NCBI Order
Micrococcales  
NCBI Family
Promicromonosporaceae  
NCBI Genus
Xylanimicrobium  
NCBI Species
Xylanimicrobium pachnodae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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