PROJECT INFORMATION
GOLD Project ID
Gp0072753  
Project Name
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29  
Other Names
  
Legacy ER Sample ID
25578  
Legacy GOLD ID
Gs0004933  
NCBI BioProject Name Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29
NCBI BioProject ID 365991
NCBI BioProject Accession PRJNA365991
NCBI Locus Tag
BYM96  
NCBI BioSample Accession SAMN06268179
PI Jennifer Pett-Ridge
Added By JGI automated process on 2014-01-06
Last Modified By JGI automated process on 2014-07-17
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of California, Berkeley (USA)
Lawrence Berkeley National Laboratory (USA)
University of Oklahoma (USA)
Lawrence Livermore National Laboratory (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2563407  (Link to NCBI )
Experiment Title Hopland grassland soil metaT H1_Bulk_29
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name SXSG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Avena fatua rhizosphere microbial communities from Hopland, California, USA
Biosample Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29
Analysis Projects Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2522572099
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921099
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921109
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2558860968
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2522572155
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2558860165
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 3300001205
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921040
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921042
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 3300012212
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921005
Combined assembly of Hopland grassland soil
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921676
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2522572149
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921095
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2523231025
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2522572128
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2523231010
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921041
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2546825534
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2522572101
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921018
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2558860971
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2523231013
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome, Counting Only)
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2558860141
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Self)
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 3300001305
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2522572100
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2522572102
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2522572150
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2558309151
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2522572103
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2546825533
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921112
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921043
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2522572104
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2556921017
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2523231029
Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome Expression - Other) - mapped to IMG dataset 2558860160
Number of Analysis Projects 40
Number of DAPs
24  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina RNASeq w/rRNA Depletion, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29
Other Names (alias, synonyms, short names)
  
Sample Description
Grasslands soil  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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