Studies
|
56,331 |
|
Biosamples
|
196,778 |
|
Sequencing Projects
|
525,147 |
|
Analysis Projects
|
385,410 |
| Organisms | 484,215 |
| PROJECT INFORMATION | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
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Gp0060999
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Project Name
|
Lentisphaerae bacterium SCGC AD-113-B08
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Other Names
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Legacy ER Project ID
|
58723
|
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Legacy GOLD ID
|
Gi0058723
|
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| NCBI BioProject Name | Lentisphaerae bacterium SCGC AD-113-B08 | ||||||||||||||||
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NCBI BioProject Accession
|
PRJNA234817 |
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NCBI Locus Tag
|
BS44
|
||||||||||||||||
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NCBI BioSample Accession
|
SAMN02745627 |
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Source Sample ID
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| PI | Ramunas Stepanauskas | ||||||||||||||||
| Added By | JGI automated process on 2013-11-21 | ||||||||||||||||
| Last Modified By | JGI automated process on 2022-07-25 | ||||||||||||||||
| Project Comments |
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Project Status
|
Permanent Draft
|
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Project Relevance
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Sequencing Center
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Bigelow Laboratory Single Cell Genomics Center (SCGC)
(USA)
DOE Joint Genome Institute (JGI) (USA) |
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
|
Dark ocean microbial single cell genomics
|
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| Is JGI Project |
Yes
|
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Project Information Visibility
|
Public | ||||||||||||||||
| PROJECT TYPE | |||||||||||||||||
|
Specimen
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Organism |
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Nucleic Acid
|
DNA |
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Sequencing Strategy
|
Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||
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JGI Data Utilization Status
|
Unrestricted
|
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JGI Award DOI
|
10.46936/10.25585/60000688 |
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| JGI Portal Download | Raw Sequence Data | ||||||||||||||||
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||
| Study |
Dark ocean microbial single cell genomics |
||||||||||||||||
| Organism |
Lentisphaerae bacterium SCGC AD-113-B08 |
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| Analysis Projects |
Lentisphaerae bacterium SCGC AD-113-B08 (unscreened) |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
|
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
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Contamination Screening Input
|
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DNA Amplification Method
|
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Sorting Technology
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Single Cell Lysis Protocol
|
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Single Cell Lysis Approach
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Sequencing Comments
|
|
|
DNA Amplification Kit
|
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|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
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Library Layout
|
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Library Screening Method
|
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Number Of Reads
|
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Read Size
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|
Vector
|
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0060999 |
| Organism Name |
Lentisphaerae bacterium SCGC AD-113-B08
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
LENTISPHAEROTA
|
| Genus |
|
| Genus Synonyms |
|
| Species |
Lentisphaerae bacterium SCGC AD-113-B08
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
SCGC AD-113-B08
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
No
|
| Culture Type |
|
| Organism Type |
Natural
|
| Uncultured Type |
Single Cell
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
278096 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Lentisphaerota
|
| NCBI Class |
|
| NCBI Order |
|
| NCBI Family |
|
| NCBI Genus |
|
| NCBI Species |
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
|
| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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