PROJECT INFORMATION
GOLD Project ID
Gp0056925  
Project Name
Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B2  
Other Names
  
Legacy ER Sample ID
24563  
Legacy GOLD ID
Gs0004288  
NCBI BioProject Name Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B2
NCBI BioProject ID 330350
NCBI BioProject Accession PRJNA330350
NCBI Locus Tag
BCK47  
NCBI BioSample Accession SAMN05421977
PI Jill Banfield
Added By JGI automated process on 2013-09-09
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metagenome sequencing of groundwater microbial communities from Rifle, Colorado  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications "Science (New York, N.Y.)" Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.

Other Publications PeerJ Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum.

SRA Experiment
 
SRA Experiment Id SRX1990958  (Link to NCBI )
Experiment Title Rifle Oxygen_injection B2
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name PAHZ
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Soil microbial communities from Rifle, Colorado, USA
Biosample Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B2
Analysis Projects Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B2 (SPAdes)
Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B2
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B2
Other Names (alias, synonyms, short names)
  
Sample Description
Groundwater microbial communities from Rifle, Colorado; Sample collected using 0.2micron filter  
SAMPLE TAXONOMY
NCBI Taxonomy ID 717931
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
  

 

 

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