PROJECT INFORMATION
GOLD Project ID
Gp0056892  
Project Name
Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1  
Other Names
  
Legacy ER Sample ID
24550  
Legacy GOLD ID
Gs0004271  
NCBI BioProject Name Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1
NCBI BioProject ID 330330
NCBI BioProject Accession PRJNA330330
NCBI Locus Tag
BCK27  
NCBI BioSample Accession SAMN05421989
PI Jill Banfield
Added By JGI automated process on 2013-09-09
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications "Science (New York, N.Y.)" Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.

The ISME journal 9(8):1846-56 Aquifer environment selects for microbial species cohorts in sediment and groundwater.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1990984  (Link to NCBI )
Experiment Title Rifle CSP2_sed 19_1
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name OUAC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Soil microbial communities from Rifle, Colorado, USA
Biosample Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1
Analysis Projects Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1
Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 (SPAdes)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
56  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1
Other Names (alias, synonyms, short names)
  
Sample Description
soil, Sediment core, 19' depth  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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