PROJECT INFORMATION
GOLD Project ID
Gp0056870  
Project Name
Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2  
Other Names
  
Legacy ER Sample ID
24545  
Legacy GOLD ID
Gs0004257  
NCBI BioProject Name Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2
NCBI BioProject Accession PRJNA330325
NCBI Locus Tag
BCK22  
NCBI BioSample Accession SAMN05421992
Source Sample ID
PI Jill Banfield
Added By JGI automated process on 2013-09-09
Last Modified By JGI automated process on 2022-07-25
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000542
JGI Portal Download Raw Sequence Data
Genome Publications "Science (New York, N.Y.)": Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.
PubMed: 23019650 DOI: 10.1126/science.1224041
The ISME journal: 9(8):1846-56 Aquifer environment selects for microbial species cohorts in sediment and groundwater.
PubMed: 25647349 DOI: 10.1038/ismej.2015.2
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX1991817  (Link to NCBI )
Experiment Title Rifle CSP2_sed 13_2
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name PAHC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Soil microbial communities from Rifle, Colorado, USA
Biosample Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2
Analysis Projects Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)
Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2
Other Names (alias, synonyms, short names)
  
Sample Description
soil, Sediment core, 13' depth, Rifle CO  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Deep subsurface  
Ecosystem Subtype
Rock core/Sediment  
Specific Ecosystem
  

 

 

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