PROJECT INFORMATION
GOLD Project ID
Gp0056816  
Project Name
Biogas fermentation microbial communities from Germany - Plant 1 DNA2  
Other Names
  
Legacy ER Sample ID
24708  
Legacy GOLD ID
Gs0004228  
NCBI BioProject Name Biogas fermentation microbial communities from Germany - Plant 1 DNA2
NCBI BioProject ID 311381
NCBI BioProject Accession PRJNA311381
NCBI Locus Tag
AXZ15  
NCBI BioSample Accession SAMN04486023
PI Alexander Sczyrba
Added By JGI automated process on 2013-09-09
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Biotechnol Biofuels Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1598042  (Link to NCBI )
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name PBBP
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Biogas fermentation microbial communities from biogas plants in Germany
Biosample Biogas fermentation microbial communities from Germany - Plant 1 DNA2
Analysis Projects Biogas fermentation microbial communities from Germany - Plant 1 DNA2
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
1  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Biogas fermentation microbial communities from Germany - Plant 1 DNA2
Other Names (alias, synonyms, short names)
  
Sample Description
Biogas plant fermentation sample  
SAMPLE TAXONOMY
NCBI Taxonomy ID 718289
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Biotransformation  
Ecosystem Type
Mixed alcohol bioreactor  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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