PROJECT INFORMATION
GOLD Project ID
Gp0056326  
Project Name
Acidomyces richmondensis microbial communities from an AMD in Iron Mountain, California, USA - floating biofilm Metatranscriptome - polyA selected  
Other Names
  
Legacy ER Sample ID
20211  
Legacy GOLD ID
Gs0004916  
NCBI BioProject Name Acidomyces richmondensis microbial communities from an AMD in Iron Mountain, California, USA - floating biofilm Metatranscriptome - polyA selected
NCBI BioProject ID 366767
NCBI BioProject Accession PRJNA366767
NCBI Locus Tag
BYU73  
NCBI BioSample Accession SAMN06268481
PI Steven W. Singer
Added By JGI automated process on 2013-02-08
Last Modified By JGI automated process on 2019-04-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3312784  (Link to NCBI )
Experiment Title Acidomyces richmondensis floating biofilm Metatranscriptome - polyA selected
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name NCWB
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX3312783  (Link to NCBI )
Experiment Title Acidomyces richmondensis floating biofilm Metatranscriptome - polyA selected
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name NCWA
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX3312785  (Link to NCBI )
Experiment Title Acidomyces richmondensis floating biofilm Metatranscriptome - polyA selected
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name NCUZ
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Acid Mine Drainage (AMD) fungal community from Richmond mine, Iron Mountain, CA
Biosample Acidomyces richmondensis microbial communities from an AMD in Iron Mountain, California, USA - floating biofilm Metatranscriptome - polyA selected
Analysis Projects Acidomyces richmondensis microbial communities from an AMD in Iron Mountain, California, USA - floating biofilm Metatranscriptome - polyA selected
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) ILLUMINA_HI_SEQ_2000
Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Acidomyces richmondensis microbial communities from an AMD in Iron Mountain, California, USA - floating biofilm Metatranscriptome - polyA selected
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 718308
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
Acid Mine Drainage  

 

 

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