PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0054289
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Project Name
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Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1
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Other Names
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Legacy ER Sample ID
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12351
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Legacy GOLD ID
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Gs0005989
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NCBI BioProject Name | Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1 | ||||||||||||||||||
NCBI BioProject Accession
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PRJNA330099 |
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NCBI Locus Tag
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BCH99
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NCBI BioSample Accession
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SAMN05422182 |
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PI | Jill Banfield | ||||||||||||||||||
Added By |
JGI automated process
on 2012-09-26 |
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Last Modified By |
JGI automated process
on 2022-03-14 |
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Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||
Specimen
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Biome |
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Nucleic Acid
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Sequencing Strategy
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Metagenome
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EXTERNAL PROJECT LINKS | |||||||||||||||||||
JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60000542 |
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JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
Genome Publications
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Environmental microbiology
18(1):159-73
Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages.
"Science (New York, N.Y.)" Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. |
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||
Study |
Soil microbial communities from Rifle, Colorado, USA |
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Biosample |
Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1 |
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Analysis Projects |
Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1 |
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Number of Analysis Projects (AP) |
1 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
Finishing Goal
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Level 1: Standard Draft |
Contamination Screening Input
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DNA Amplification Method
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Sorting Technology
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 Illumina HiSeq 2000 |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1 |
Other Names (alias, synonyms, short names) |
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Sample Description |
soil microbial communities from Rifle Colorado, sediment ftom 16ft
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
410658 |
GOLD CLASSIFICATION | |
Ecosystem |
Environmental
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Ecosystem Category |
Terrestrial
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Ecosystem Type |
Deep subsurface
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Ecosystem Subtype |
Rock core/Sediment
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Specific Ecosystem |
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