PROJECT INFORMATION
GOLD Project ID
Gp0054289  
Project Name
Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1  
Other Names
  
Legacy ER Sample ID
12351  
Legacy GOLD ID
Gs0005989  
NCBI BioProject Name Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1
NCBI BioProject Accession PRJNA330099
NCBI Locus Tag
BCH99  
NCBI BioSample Accession SAMN05422182
PI Jill Banfield
Added By JGI automated process on 2012-09-26
Last Modified By JGI automated process on 2022-03-14
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000542
JGI Portal Download Raw Sequence Data
Genome Publications Environmental microbiology 18(1):159-73 Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages.

"Science (New York, N.Y.)" Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX1990953  (Link to NCBI )
Experiment Title Rifle sediment 16ft 1
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name GNAB
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Soil microbial communities from Rifle, Colorado, USA
Biosample Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1
Analysis Projects Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1
Other Names (alias, synonyms, short names)
  
Sample Description
soil microbial communities from Rifle Colorado, sediment ftom 16ft  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Deep subsurface  
Ecosystem Subtype
Rock core/Sediment  
Specific Ecosystem
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?