PROJECT NAME
GOLD Project ID
Gp0052415  
Project Name
Premature human infant gut microbial communities from University of California, Berkeley, USA - Serratia sp. UC1SER metagenomic assembly  
Other Names
  
Legacy ER Sample ID
823  
Legacy GOLD ID
Gs0002332  
NCBI BioProject Name
  
NCBI BioProject ID 61765
NCBI BioProject Accession
  
NCBI Locus Tag
  
NCBI BioSample Accession
  
PI
Added By Ioanna Pagani on 2011-06-14
Last Modified By Konstantinos Liolios on 2011-08-16
Project Comments
  
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center University of California, Berkeley (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 108(3):1128-33 Strain-resolved community genomic analysis of gut microbial colonization in a premature infant.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Premature human infant gut microbial communities from University of California, Berkeley, USA
Biosamples Premature human infant gut microbial communities from University of California, Berkeley, USA - Serratia sp. UC1SER metagenomic assembly
Analysis Projects Premature human infant gut microbial communities from University of California, Berkeley, USA - Serratia sp. UC1SER metagenomic assembly
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Premature human infant gut microbial communities from University of California, Berkeley, USA - Serratia sp. UC1SER metagenomic assembly
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  

 

 

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