PROJECT NAME
GOLD Project ID
Gp0051377  
Project Name
Trichonympha termite gut microbial communities from Mt. Pinos, Los Padres National Forest, California, USA  
Other Names
  
Legacy ER Sample ID
10208  
Legacy GOLD ID
Gs0000516  
NCBI BioProject Name Termite Gut Metagenome
NCBI BioProject ID 78659
NCBI BioProject Accession PRJNA78659
NCBI Locus Tag
  
NCBI BioSample Accession SAMN00762031
PI Susannah Tringe
Added By Susannah Tringe on 2009-07-10
Last Modified By Supratim Mukherjee on 2016-06-30
Project Comments
  
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Trichonympha termite gut microbial communities from Mt. Pinos, Los Padres National Forest, California, USA
Biosamples Trichonympha termites gut ecosystem from Los Padres National Forest, California, USA
Analysis Projects Trichonympha termite gut microbial communities from Mt. Pinos, Los Padres National Forest, California, USA
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Dideoxysequencing
454-GS20
Sanger; 454
Library Method (MIGS-28)
short-insert and 454-tGS20  
Number Of Reads
  
Read Size
  
Vector
pUC18  
GC Percent
39  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Trichonympha termites gut ecosystem from Los Padres National Forest, California, USA
Other Names (alias, synonyms, short names)
  
Sample Description
Candidatus Endomicrobium trichonymphae  
SAMPLE TAXONOMY
NCBI Taxonomy ID 433724
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Arthropoda  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Gut  
Specific Ecosystem
  

 

 

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