PROJECT INFORMATION
GOLD Project ID
Gp0048708  
Project Name
Mycobacterium tuberculosis TKK_02_0036  
Other Names
  
Legacy ER Project ID
55568  
Legacy GOLD ID
Gi0055568  
NCBI BioProject Name Mycobacterium tuberculosis TKK_02_0036
NCBI BioProject Accession PRJNA218245
NCBI Locus Tag
P450  
NCBI BioSample Accession SAMN02350428
Source Sample ID
PI Unknown
Added By JGI automated process on 2013-10-11
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX399783  (Link to NCBI )
Experiment Title Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-307488' containing sample '64' from individual 'TKK_02_0036'
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Pond-307488
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX364135  (Link to NCBI )
Experiment Title Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-188700' containing sample '64' from individual 'TKK_02_0036'
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Solexa-188700
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
PROJECT COMPOSITION
Study TB-ARC - KRITH
Organism Mycobacterium tuberculosis TKK_02_0036
Analysis Projects Mycobacterium tuberculosis TKK_02_0036
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
66  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0048708
Organism Name
Mycobacterium tuberculosis TKK_02_0036  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOMYCETOTA  
Genus
Mycobacterium  
Genus Synonyms
  
Species
Mycobacterium tuberculosis  
Subspecies
  
Species Synonyms
  
Strain
TKK_02_0036  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1397873
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinomycetota  
NCBI Class
Actinomycetes  
NCBI Order
Mycobacteriales  
NCBI Family
Mycobacteriaceae  
NCBI Genus
Mycobacterium  
NCBI Species
Mycobacterium tuberculosis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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