PROJECT INFORMATION
GOLD Project ID
Gp0048037  
Project Name
Arenimonas oryziterrae YC6267, DSM 21050  
Other Names
  
Legacy ER Project ID
57371  
Legacy GOLD ID
Gi0057371  
NCBI BioProject Name Arenimonas oryziterrae DSM 21050 = YC6267
NCBI BioProject ID 214576
NCBI BioProject Accession PRJNA214576
NCBI Locus Tag
N789  
NCBI BioSample Accession SAMN03015265
PI
Added By JGI automated process on 2013-10-11
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center Huazhong Agricultural University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Arenimonas oryziterrae DSM 21050 = YC6267 Genome sequencing
Organism Arenimonas oryziterrae YC6267
Analysis Projects Arenimonas oryziterrae YC6267, DSM 21050
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013403
Organism Name
Arenimonas oryziterrae YC6267  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Arenimonas  
Genus Synonyms
  
Species
Arenimonas oryziterrae  
Subspecies
  
Species Synonyms
  
Strain
DSM 21050  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 21050  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.14912  
Exemplar Name
Arenimonas oryziterrae  
Taxon DOI
10.1601/tx.14912  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121015
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Xanthomonadales  
NCBI Family
Xanthomonadaceae  
NCBI Genus
Arenimonas  
NCBI Species
Arenimonas oryziterrae  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Agricultural field  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 846014
Genbank 16S ID EU376961
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
5  
Cell Diameter
0.5-0.6 um  
Cell Length
2.3-2.6 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Clusters
Diseases
  
Known Habitats Rice paddies
Metabolisms
  
Phenotypes Catalase positive
Energy Sources Heterotroph

 

 

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