PROJECT INFORMATION
GOLD Project ID
Gp0047015  
Project Name
Melampsora allii-populina 12AY07  
Other Names
  
Legacy ER Project ID
54483  
Legacy GOLD ID
Gi0054483  
NCBI BioProject Name Melampsora allii-populina 12AY07
NCBI BioProject ID 247510
NCBI BioProject Accession PRJNA247510
NCBI Locus Tag
EW51  
NCBI BioSample Accession SAMN02787138
PI Joseph Spatafora
Added By JGI automated process on 2013-09-06
Last Modified By JGI automated process on 2019-11-10
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
1000 Fungal Genomes  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2052427  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052405  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052404  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052426  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052429  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052407  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052428  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052406  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052423  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052401  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052422  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052400  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052425  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052403  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052402  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052424  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052409  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052408  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052397  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name YCGS
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX2052430  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052432  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052399  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052410  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052431  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052398  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name YSCB
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX2052416  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052415  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052437  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name YCGN
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2052418  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052417  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052412  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052434  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052433  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052411  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052436  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052414  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052413  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052435  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052419  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052421  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2052420  (Link to NCBI )
Experiment Title Melampsora allii-populina 12AY07 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name ZUYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study 1000 Fungal Genomes
Organism Melampsora allii-populina 12AY07
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
Production RnD, Tubes; Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0047015
Organism Name
Melampsora allii-populina 12AY07  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Melampsora  
Genus Synonyms
  
Species
Melampsora allii-populina  
Subspecies
  
Species Synonyms
  
Strain
12AY07  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 242475
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Pucciniomycetes  
NCBI Order
Pucciniales  
NCBI Family
Melampsoraceae  
NCBI Genus
Melampsora  
NCBI Species
Melampsora allii-populina  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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