PROJECT INFORMATION
GOLD Project ID
Gp0045611  
Project Name
Gemmatimonadetes bacterium SCGC AB-679-O14  
Other Names
  
Legacy ER Project ID
52404  
Legacy GOLD ID
Gi0052404  
NCBI BioProject Name Gemmatimonadetes bacterium SCGC AB-679-O14
NCBI BioProject Accession PRJNA221080
NCBI Locus Tag
Q409  
NCBI BioSample Accession SAMN02745560
Source Sample ID
PI Steven J. Hallam
Added By JGI automated process on 2013-08-14
Last Modified By JGI automated process on 2023-02-27
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center Bigelow Laboratory Single Cell Genomics Center (SCGC) (USA)
DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Opening a single-cell genomic window on microbial ecotype selection in expanding marine oxygen minimum zones  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000761
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX711892  (Link to NCBI )
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection MDA
Library Name OCBY
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1758672  (Link to NCBI )
Experiment Title Gemmatimonadetes bacterium SCGC AB-679-O14
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection other
Library Name ATSAG
Library Layout SINGLE
Library Instrument NEXT_SEQ_500
 
SRA Experiment Id SRX1758671  (Link to NCBI )
Experiment Title Gemmatimonadetes bacterium SCGC AB-679-O14
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection other
Library Name ASBBY
Library Layout SINGLE
Library Instrument NEXT_SEQ_500
 
SRA Experiment Id SRX1758670  (Link to NCBI )
Experiment Title Gemmatimonadetes bacterium SCGC AB-679-O14
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection other
Library Name APWHY
Library Layout SINGLE
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Single-cell microbial genomes from expanding oxygen minimum zones (OMZs) of the northeastern subarctic Pacific Ocean (NESAP)
Organism Gemmatimonadetes bacterium SCGC AB-679-O14
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NextSeq-HO
Library Method (MIGS-28)
Production RnD, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0045611
Organism Name
Gemmatimonadetes bacterium SCGC AB-679-O14  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
GEMMATIMONADOTA  
Genus
  
Genus Synonyms
  
Species
Gemmatimonadetes bacterium SCGC AB-679-O14  
Subspecies
  
Species Synonyms
  
Strain
SCGC AB-679-O14  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1403374
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Gemmatimonadota  
NCBI Class
  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
Gemmatimonadetes bacterium SCGC AB-679-O14  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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