Studies
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38,701 |
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Biosamples
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80,986 |
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Sequencing Projects
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303,713 |
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Analysis Projects
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245,520 |
| Organisms | 361,580 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0045445
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Project Name
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Ferrimicrobium acidiphilum DSM 19497
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Other Names
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Legacy ER Project ID
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52381
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Legacy GOLD ID
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| NCBI BioProject Name | Ferrimicrobium acidiphilum DSM 19497 strain:T23 |
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NCBI BioProject ID
|
273882 |
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NCBI BioProject Accession
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PRJNA273882 |
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NCBI Locus Tag
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FEAC
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NCBI BioSample Accession
|
SAMN03299411 |
| PI | G2L Team |
| Added By |
G2L Team
on 2013-08-12 |
| Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Environmental |
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Sequencing Center
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Goettingen Genomics Laboratory
(Germany)
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Collaborating Institute
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Funding Agency
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Project Description
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Sequencing of acidophilic heterotrophic iron oxidising organisms. Strain T23T (= DSMZ 19497 T, ATCC BAA-1647 T), which represents the species Ferrimicrobium acidiphilium as type strain, was isolated from a pyrite enrichment culture inoculated with a mine water sample from an abandoned sulfur mine in Wales, UK (Johnson et al. 2009). It is an acidophilic heterotrophic iron-oxidiser able to reduce ferric iron under anoxic conditions
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| Is JGI Project |
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Genome analysis of acidophilic iron oxidising actinobacteria |
| Organism |
Ferrimicrobium acidiphilum DSM 19497 |
| Analysis Projects |
Ferrimicrobium acidiphilum DSM 19497 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
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Finishing Goal
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Level 6: Finished |
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Illumina GAIIx |
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0013437 |
| Organism Name |
Ferrimicrobium acidiphilum DSM 19497
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
ACTINOBACTERIA
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| Genus |
Ferrimicrobium
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| Genus Synonyms |
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| Species |
Ferrimicrobium acidiphilum
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| Subspecies |
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| Species Synonyms |
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| Strain |
T23
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 19497
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.14256
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| Exemplar Name |
Ferrimicrobium acidiphilum
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| Taxon DOI |
10.1601/tx.14256
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1121877 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Actinobacteria
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| NCBI Class |
Acidimicrobiia
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| NCBI Order |
Acidimicrobiales
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| NCBI Family |
Acidimicrobiaceae
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| NCBI Genus |
Ferrimicrobium
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| NCBI Species |
Ferrimicrobium acidiphilum
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Terrestrial
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| Ecosystem Type |
Geologic
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| Ecosystem Subtype |
Mine
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
377934 |
| Genbank 16S ID |
AF251436 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
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| Cell Shape |
Rod-shaped
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| Motility |
Motile
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| Sporulation |
Nonsporulating
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| Temperature Range |
Mesophile
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| Temperature Optimum |
35 C
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| Salinity |
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| pH |
2
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| Cell Diameter |
0.5 um
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| Cell Length |
1.0-3.0 um
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Mine Aquatic Acid mine drainage Mine water |
| Metabolisms |
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| Phenotypes |
Acidophile |
| Energy Sources |
Heterotroph |
| CYANOBACTERIA METADATA | |
| Filaments |
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| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
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| Complementary chromatic adaptation (CCA) |
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| Medium Types |
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