PROJECT INFORMATION
GOLD Project ID
Gp0044517  
Project Name
Pelobacter seleniigenes DSM 18267  
Other Names
  
Legacy ER Project ID
51577  
Legacy GOLD ID
Gi0051577  
NCBI BioProject Name Pelobacter seleniigenes DSM 18267
NCBI BioProject ID 215343
NCBI BioProject Accession PRJNA215343
NCBI Locus Tag
N909  
NCBI BioSample Accession SAMN02744830
PI Elisabetta Bini
Added By JGI automated process on 2013-07-19
Last Modified By JGI automated process on 2020-09-27
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Whole-genome sequencing, assembly and initial annotation of four phylogenetically diverse strains of selenate respiring bacteria  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1922085  (Link to NCBI )
Experiment Title Pelobacter seleniigenes DSM 18267
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OYXW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1922086  (Link to NCBI )
Experiment Title Pelobacter seleniigenes DSM 18267
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OYXW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1922087  (Link to NCBI )
Experiment Title Pelobacter seleniigenes DSM 18267
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OYXW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Whole-genome sequencing, assembly and initial annotation of four phylogenetically diverse strains of selenate respiring bacteria
Organism Pelobacter seleniigenes DSM 18267
Analysis Projects Pelobacter seleniigenes DSM 18267
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013122
Organism Name
Pelobacter seleniigenes DSM 18267  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Pelobacter  
Genus Synonyms
  
Species
Pelobacter seleniigenes  
Subspecies
  
Species Synonyms
  
Strain
DSM 18267  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 18267  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.11340  
Exemplar Name
Pelobacter seleniigenes  
Taxon DOI
10.1601/tx.11340  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1122946
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfuromonadales  
NCBI Family
Desulfuromonadaceae  
NCBI Genus
Pelobacter  
NCBI Species
Pelobacter seleniigenes  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Wetlands  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID DQ991964
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Wetland
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?