Studies
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56,334 |
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Biosamples
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196,986 |
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Sequencing Projects
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525,358 |
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Analysis Projects
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385,008 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |||||||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0044419
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Project Name
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Desulfohalovibrio reitneri L21-Syr-AB
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Other Names
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Legacy ER Project ID
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51472
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Legacy GOLD ID
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Gi0051472
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| NCBI BioProject Name | Desulfohalovibrio reitneri L21-Syr-AB | ||||||||||||||||||||||||||||||||||||
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NCBI BioProject Accession
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PRJNA215345 |
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NCBI Locus Tag
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N911
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NCBI BioSample Accession
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SAMN02744827 |
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Source Sample ID
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| PI | Jonathan Eisen | ||||||||||||||||||||||||||||||||||||
| Added By | JGI automated process on 2013-07-19 | ||||||||||||||||||||||||||||||||||||
| Last Modified By | JGI automated process on 2023-05-31 | ||||||||||||||||||||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Continuation of the Genomic Encyclopedia of Bacteria and Archaea pilot project
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||||||
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JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60007347 |
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| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||||||||||||||||||||
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Genome Publications
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Frontiers in microbiology: Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat. PubMed: 31068923 DOI: 10.3389/fmicb.2019.00862 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||||||
| Study |
Continuation of the Genomic Encyclopedia of Bacteria and Archaea pilot project (GEBA) |
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| Organism |
Desulfohalovibrio reitneri L21-Syr-AB |
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| Analysis Projects |
Desulfohalovibrio reitneri L21-Syr-AB |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
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Finishing Goal
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Level 3: Improved-High-Quality Draft |
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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PacBio RS II |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
65
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0044419 |
| Organism Name |
Desulfohalovibrio reitneri L21-Syr-AB
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-DELTA
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| Genus |
Desulfohalovibrio
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| Genus Synonyms |
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| Species |
Desulfohalovibrio reitneri
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| Subspecies |
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| Species Synonyms |
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| Strain |
L21-Syr-AB
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 26903
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| Type Strain |
Yes
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1307759 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Thermodesulfobacteriota
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| NCBI Class |
Desulfovibrionia
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| NCBI Order |
Desulfovibrionales
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| NCBI Family |
Desulfovibrionaceae
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| NCBI Genus |
Desulfohalovibrio
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| NCBI Species |
Desulfohalovibrio reitneri
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Aquatic
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| Ecosystem Type |
Non-marine Saline and Alkaline
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| Ecosystem Subtype |
Saline
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| Specific Ecosystem |
Microbial mats
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
Motile
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
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| Cell Diameter |
0.7 μm
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| Cell Length |
2.5 to 5.0 μm
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Hypersaline lakes |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| CYANOBACTERIA METADATA | |
| Filaments |
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| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
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| Complementary chromatic adaptation (CCA) |
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| Medium Types |
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