PROJECT INFORMATION
GOLD Project ID
Gp0042738  
Project Name
Candidatus Thioglobus sp. AB-750K18AB-904  
Other Names
SUP05_AB-750K18AB-904  
Legacy ER Project ID
49544  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
Source Sample ID
PI Steven J. Hallam
Added By Jody Wright on 2013-05-29
Last Modified By Supratim Mukherjee on 2022-10-06
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Canada's Michael Smith Genome Sciences Centre (USA)
Collaborating Institute University of British Columbia (Canada)
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Elife: Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics.
PubMed: 25171894 DOI: 10.7554/eLife.03125
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Microbial Systems Ecology of Expanding Oxygen Minimum Zones in the Northeast subarctic Pacific Ocean
Organism Candidatus Thioglobus sp. AB-750K18AB-904
Analysis Projects Candidatus Thioglobus sp. AB-750K18AB-904 (unscreened)
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Std PE  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
38  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0042738
Organism Name
Candidatus Thioglobus sp. AB-750K18AB-904  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
  
Genus Synonyms
  
Species
Candidatus Thioglobus sp. AB-750K18AB-904  
Subspecies
  
Species Synonyms
  
Strain
AB-750K18AB-904  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 655186
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Gammaproteobacteria  
NCBI Order
  
NCBI Family
  
NCBI Genus
Candidatus Thioglobus  
NCBI Species
uncultured Candidatus Thioglobus sp.  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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