PROJECT INFORMATION
GOLD Project ID
Gp0042613  
Project Name
Exiguobacterium oxidotolerans JCM 12280  
Other Names
  
Legacy ER Project ID
49212  
Legacy GOLD ID
Gi0049212  
NCBI BioProject Name Exiguobacterium oxidotolerans JCM 12280
NCBI BioProject Accession PRJNA218048
NCBI Locus Tag
P403  
NCBI BioSample Accession SAMN02841151
PI Tatiana A. Vishnivetskaya
Added By JGI automated process on 2013-05-23
Last Modified By JGI automated process on 2020-09-13
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Exiguobacterium psychrotrophic and thermophilic lifestyle: an example of genome evolution or genome adaptation  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications Genome announcements Draft genome sequences of 10 strains of the genus exiguobacterium.

Other Publications Extremophiles 13(3):541-55 The Exiguobacterium genus: biodiversity and biogeography.

SRA Experiment
 
SRA Experiment Id SRX1881034  (Link to NCBI )
Experiment Title Exiguobacterium oxidotolerans JCM 12280
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name OSYB
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1881033  (Link to NCBI )
Experiment Title Exiguobacterium oxidotolerans JCM 12280
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name UHTX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1881032  (Link to NCBI )
Experiment Title Exiguobacterium oxidotolerans JCM 12280
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name UHTX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1881031  (Link to NCBI )
Experiment Title Exiguobacterium oxidotolerans JCM 12280
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name UHTX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1881030  (Link to NCBI )
Experiment Title Exiguobacterium oxidotolerans JCM 12280
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OYBW
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Exiguobacterium psychrotrophic and thermophilic lifestyle: an example of genome evolution or genome adaptation
Organism Exiguobacterium oxidotolerans JCM 12280
Analysis Projects Exiguobacterium oxidotolerans JCM 12280
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0042613
Organism Name
Exiguobacterium oxidotolerans JCM 12280  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Exiguobacterium  
Genus Synonyms
  
Species
Exiguobacterium oxidotolerans  
Subspecies
  
Species Synonyms
  
Strain
JCM 12280  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 12280  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8582  
Exemplar Name
Exiguobacterium oxidotolerans  
Taxon DOI
10.1601/tx.8582  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1397699
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
  
NCBI Genus
Exiguobacterium  
NCBI Species
Exiguobacterium oxidotolerans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
Halotolerant  
pH
7  
Cell Diameter
0.6-0.7 um  
Cell Length
0.6-1.8 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes Catalase positive
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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