Studies
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56,290 |
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Biosamples
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195,545 |
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Sequencing Projects
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523,555 |
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Analysis Projects
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381,673 |
| Organisms | 484,046 |
| PROJECT INFORMATION | |||||||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0042612
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Project Name
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Exiguobacterium marinum DSM 16307
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Other Names
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Legacy ER Project ID
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49211
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Legacy GOLD ID
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Gi0049211
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| NCBI BioProject Name | Exiguobacterium marinum DSM 16307 | ||||||||||||||||||||||||||||||||||||
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NCBI BioProject Accession
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PRJNA218045 |
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NCBI Locus Tag
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P400
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NCBI BioSample Accession
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SAMN02743964 |
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Source Sample ID
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| PI | Tatiana A. Vishnivetskaya | ||||||||||||||||||||||||||||||||||||
| Added By | JGI automated process on 2013-05-23 | ||||||||||||||||||||||||||||||||||||
| Last Modified By | JGI automated process on 2022-09-05 | ||||||||||||||||||||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Exiguobacterium psychrotrophic and thermophilic lifestyle: an example of genome evolution or genome adaptation
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||||||
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JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60007548 |
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| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||||||||||||||||||||
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Genome Publications
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Genome announcements: Draft genome sequences of 10 strains of the genus exiguobacterium. PubMed: 25323723 DOI: 10.1128/genomeA.01058-14 |
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Other Publications
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Extremophiles: 13(3):541-55 The Exiguobacterium genus: biodiversity and biogeography. PubMed: 19381755 DOI: 10.1007/s00792-009-0243-5 |
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||||||
| Study |
Exiguobacterium psychrotrophic and thermophilic lifestyle: an example of genome evolution or genome adaptation |
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| Organism |
Exiguobacterium marinum DSM 16307 |
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| Analysis Projects |
Exiguobacterium marinum DSM 16307 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
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Finishing Goal
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Level 3: Improved-High-Quality Draft |
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
47
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0042612 |
| Organism Name |
Exiguobacterium marinum DSM 16307
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
BACILLOTA
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| Genus |
Exiguobacterium
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| Genus Synonyms |
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| Species |
Exiguobacterium marinum
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| Subspecies |
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| Species Synonyms |
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| Strain |
DSM 16307
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 16307
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.9334
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| Exemplar Name |
Exiguobacterium marinum
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| Taxon DOI |
10.1601/tx.9334
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1397696 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Bacillota
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| NCBI Class |
Bacilli
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| NCBI Order |
Bacillales
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| NCBI Family |
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| NCBI Genus |
Exiguobacterium
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| NCBI Species |
Exiguobacterium marinum
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Aquatic
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| Ecosystem Type |
Marine
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| Ecosystem Subtype |
Intertidal zone
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
AY594266 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative anaerobe
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| Cell Shape |
Rod-shaped
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| Motility |
Motile
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
5
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| CYANOBACTERIA METADATA | |
| Filaments |
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| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
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| Complementary chromatic adaptation (CCA) |
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| Medium Types |
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