PROJECT INFORMATION
GOLD Project ID
Gp0042612  
Project Name
Exiguobacterium marinum DSM 16307  
Other Names
  
Legacy ER Project ID
49211  
Legacy GOLD ID
Gi0049211  
NCBI BioProject Name Exiguobacterium marinum DSM 16307
NCBI BioProject Accession PRJNA218045
NCBI Locus Tag
P400  
NCBI BioSample Accession SAMN02743964
Source Sample ID
PI Tatiana A. Vishnivetskaya
Added By JGI automated process on 2013-05-23
Last Modified By JGI automated process on 2022-09-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Exiguobacterium psychrotrophic and thermophilic lifestyle: an example of genome evolution or genome adaptation  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60007548
JGI Portal Download Raw Sequence Data
Genome Publications Genome announcements: Draft genome sequences of 10 strains of the genus exiguobacterium.
PubMed: 25323723 DOI: 10.1128/genomeA.01058-14
Other Publications Extremophiles: 13(3):541-55 The Exiguobacterium genus: biodiversity and biogeography.
PubMed: 19381755 DOI: 10.1007/s00792-009-0243-5
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX1758624  (Link to NCBI )
Experiment Title Exiguobacterium marinum DSM 16307
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OYGA
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1758623  (Link to NCBI )
Experiment Title Exiguobacterium marinum DSM 16307
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name NTZU
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Exiguobacterium psychrotrophic and thermophilic lifestyle: an example of genome evolution or genome adaptation
Organism Exiguobacterium marinum DSM 16307
Analysis Projects Exiguobacterium marinum DSM 16307
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0042612
Organism Name
Exiguobacterium marinum DSM 16307  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACILLOTA  
Genus
Exiguobacterium  
Genus Synonyms
  
Species
Exiguobacterium marinum  
Subspecies
  
Species Synonyms
  
Strain
DSM 16307  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 16307  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9334  
Exemplar Name
Exiguobacterium marinum  
Taxon DOI
10.1601/tx.9334  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1397696
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacillota  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
  
NCBI Genus
Exiguobacterium  
NCBI Species
Exiguobacterium marinum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY594266
GENERAL PROPERTIES
Oxygen Requirement
Facultative anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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