PROJECT INFORMATION
GOLD Project ID
Gp0041943  
Project Name
Polycyclovorans algicola TG408  
Other Names
  
Legacy ER Project ID
47897  
Legacy GOLD ID
Gi0047897  
NCBI BioProject Name Polycyclovorans algicola TG408
NCBI BioProject ID 225849
NCBI BioProject Accession PRJNA225849
NCBI Locus Tag
U741  
NCBI BioSample Accession SAMN02744757
PI William Whitman
Added By JGI automated process on 2013-05-14
Last Modified By JGI automated process on 2020-09-13
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Whole Genome Sequencing of Novel Marine Hydrocarbon-Degrading Bacteria  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Genome announcements Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2050974  (Link to NCBI )
Experiment Title Polycyclovorans algicola TG408
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PGHY
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1880901  (Link to NCBI )
Experiment Title Polycyclovorans algicola TG408
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PGHY
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1880900  (Link to NCBI )
Experiment Title Polycyclovorans algicola TG408
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PGHY
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Whole Genome Sequencing of Novel Marine Hydrocarbon-Degrading Bacteria
Organism Polycyclovorans algicola TG408
Analysis Projects Polycyclovorans algicola TG408
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0041943
Organism Name
Polycyclovorans algicola TG408  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Polycyclovorans  
Genus Synonyms
  
Species
Polycyclovorans algicola  
Subspecies
  
Species Synonyms
  
Strain
TG408  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1415779
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Nevskiales  
NCBI Family
Sinobacteraceae  
NCBI Genus
Polycyclovorans  
NCBI Species
Polycyclovorans algicola  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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