PROJECT INFORMATION
GOLD Project ID
Gp0040506  
Project Name
Azospira oryzae PS  
Other Names
  
Legacy ER Project ID
46474  
Legacy GOLD ID
Gr0046474  
NCBI BioProject Name Azospira oryzae PS
NCBI BioProject Accession PRJNA250450
NCBI Locus Tag
GD04  
NCBI BioSample Accession SAMN02821417
PI Adam Deutschbauer
Added By JGI automated process on 2013-05-08
Last Modified By JGI automated process on 2021-11-07
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Functional Encyclopedia of Bacteria and Archaea (FEBA)  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Transposon Mutagenesis Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60007525
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Functional Encyclopedia of Bacteria and Archaea (FEBA)
Organism Azospira oryzae PS
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0001917
Organism Name
Azospira oryzae PS  
Other names (alias, synonyms, short names, common names)
Azospira suillum PS  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Azospira  
Genus Synonyms
Dechlorosoma  
Species
Azospira oryzae  
Subspecies
  
Species Synonyms
  
Strain
PS  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 13638  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2033  
Exemplar Name
Azospira oryzae  
Taxon DOI
10.1601/tx.2033  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 640081
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Rhodocyclales  
NCBI Family
Rhodocyclaceae  
NCBI Genus
Azospira  
NCBI Species
Azospira oryzae  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF011347
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Sediment
Aquatic
Soil
Host
Metabolisms
  
Phenotypes
  
Energy Sources Diazotroph

 

 

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