PROJECT INFORMATION
GOLD Project ID
Gp0037627  
Project Name
Tupaia chinensis  
Other Names
  
Legacy ER Project ID
43428  
Legacy GOLD ID
Gi0043428  
NCBI BioProject Name Tupaia chinensis
NCBI BioProject Accession PRJNA169406
NCBI Locus Tag
  
NCBI BioSample Accession SAMN01084043
PI
Added By JGI automated process on 2013-04-02
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Beijing Genomics Institute (BGI) (China)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Nature communications Genome of the Chinese tree shrew.

Nucleic acids research 25(5):955-64 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

SRA Experiment
 
SRA Experiment Id SRX156670  (Link to NCBI )
Experiment Title 101224_I147_FC812MBABXX_L6_TUPrvgDAADUAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101224_I147_FC812MBABXX_L6_TUPrvgDAADUAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156671  (Link to NCBI )
Experiment Title 110116_I112_FC81C67ABXX_L3_TUPrvgDAADFCCPEI
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 110116_I112_FC81C67ABXX_L3_TUPrvgDAADFCCPEI
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 180
 
SRA Experiment Id SRX156656  (Link to NCBI )
Experiment Title 100822_I186_FC2083KABXX_L5_TUPrvgDAADWBAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100822_I186_FC2083KABXX_L5_TUPrvgDAADWBAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156657  (Link to NCBI )
Experiment Title 100911_I154_FC802MWABXX_L2_TUPrvgDAADWBAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100911_I154_FC802MWABXX_L2_TUPrvgDAADWBAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156654  (Link to NCBI )
Experiment Title 100822_I186_FC2083KABXX_L4_TUPrvgDAADWAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100822_I186_FC2083KABXX_L4_TUPrvgDAADWAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156655  (Link to NCBI )
Experiment Title 100911_I154_FC802MWABXX_L1_TUPrvgDAADWAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100911_I154_FC802MWABXX_L1_TUPrvgDAADWAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156652  (Link to NCBI )
Experiment Title 100716_I160_FC202B8ABXX_L4_TUPrvgDAIDMAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100716_I160_FC202B8ABXX_L4_TUPrvgDAIDMAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156653  (Link to NCBI )
Experiment Title 101128_I251_FC80F6HABXX_L2_TUPrvgDAADMAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101128_I251_FC80F6HABXX_L2_TUPrvgDAADMAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156672  (Link to NCBI )
Experiment Title 110116_I112_FC81C67ABXX_L3_TUPrvgDBBDFCCPEI
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 110116_I112_FC81C67ABXX_L3_TUPrvgDBBDFCCPEI
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 180
 
SRA Experiment Id SRX156650  (Link to NCBI )
Experiment Title 100624_I126_FC200TLABXX_L6_TUPrvgDAIDMAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100624_I126_FC200TLABXX_L6_TUPrvgDAIDMAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156651  (Link to NCBI )
Experiment Title 100716_I160_FC202B8ABXX_L3_TUPrvgDAIDMAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100716_I160_FC202B8ABXX_L3_TUPrvgDAIDMAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156649  (Link to NCBI )
Experiment Title 101021_I282_FC80ECAABXX_L2_TUPrvgDAIDMAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101021_I282_FC80ECAABXX_L2_TUPrvgDAIDMAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156647  (Link to NCBI )
Experiment Title 100716_I160_FC202B8ABXX_L2_TUPrvgDAEDIAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100716_I160_FC202B8ABXX_L2_TUPrvgDAEDIAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156669  (Link to NCBI )
Experiment Title 101208_I198_FC80NYUABXX_L7_TUPrvgDAADUBBPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101208_I198_FC80NYUABXX_L7_TUPrvgDAADUBBPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156648  (Link to NCBI )
Experiment Title 101021_I282_FC80ECAABXX_L5_TUPrvgDAEDIAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101021_I282_FC80ECAABXX_L5_TUPrvgDAEDIAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156660  (Link to NCBI )
Experiment Title 100913_I244_FC209MWABXX_L6_TUPrvgDABDWBAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100913_I244_FC209MWABXX_L6_TUPrvgDABDWBAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156645  (Link to NCBI )
Experiment Title 100624_I126_FC200TLABXX_L7_TUPrvgDAEDIAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100624_I126_FC200TLABXX_L7_TUPrvgDAEDIAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156667  (Link to NCBI )
Experiment Title 100913_I244_FC209UUABXX_L5_TUPrvgDAADTBBPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100913_I244_FC209UUABXX_L5_TUPrvgDAADTBBPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156646  (Link to NCBI )
Experiment Title 100716_I160_FC202B8ABXX_L1_TUPrvgDAEDIAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100716_I160_FC202B8ABXX_L1_TUPrvgDAEDIAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156668  (Link to NCBI )
Experiment Title 101208_I198_FC80NYUABXX_L6_TUPrvgDAADUAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101208_I198_FC80NYUABXX_L6_TUPrvgDAADUAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156665  (Link to NCBI )
Experiment Title 100829_I174_FC80493ABXX_L2_TUPrvgDAADTAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100829_I174_FC80493ABXX_L2_TUPrvgDAADTAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156643  (Link to NCBI )
Experiment Title 101127_I162_FC80GKAABXX_L6_TUPrvgDAADBACPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101127_I162_FC80GKAABXX_L6_TUPrvgDAADBACPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156644  (Link to NCBI )
Experiment Title 101128_I251_FC80F6HABXX_L3_TUPrvgDAADIAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101128_I251_FC80F6HABXX_L3_TUPrvgDAADIAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156666  (Link to NCBI )
Experiment Title 101001_I120_FC8052CABXX_L3_TUPrvgDAADTAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101001_I120_FC8052CABXX_L3_TUPrvgDAADTAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156641  (Link to NCBI )
Experiment Title 100913_I120_FC80391ABXX_L4_TUPrvgDAADBADPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100913_I120_FC80391ABXX_L4_TUPrvgDAADBADPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156663  (Link to NCBI )
Experiment Title 100910_I124_FC20A25ABXX_L2_TUPrvgDAADLBBPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM PCR
Library Name 100910_I124_FC20A25ABXX_L2_TUPrvgDAADLBBPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156642  (Link to NCBI )
Experiment Title 101021_I282_FC80ECAABXX_L1_TUPrvgDAADBADPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101021_I282_FC80ECAABXX_L1_TUPrvgDAADBADPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156664  (Link to NCBI )
Experiment Title 100910_I124_FC20A25ABXX_L3_TUPrvgDAADLCCPE_
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100910_I124_FC20A25ABXX_L3_TUPrvgDAADLCCPE_
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156661  (Link to NCBI )
Experiment Title 100822_I186_FC2083KABXX_L3_TUPrvgDAADLAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100822_I186_FC2083KABXX_L3_TUPrvgDAADLAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156662  (Link to NCBI )
Experiment Title 100911_I154_FC802MWABXX_L3_TUPrvgDAADLAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100911_I154_FC802MWABXX_L3_TUPrvgDAADLAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156640  (Link to NCBI )
Experiment Title 100810_I171_FC2082AABXX_L2_TUPrvgDAADBADPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100810_I171_FC2082AABXX_L2_TUPrvgDAADBADPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156638  (Link to NCBI )
Experiment Title 100810_I171_FC2082AABXX_L1_TUPrvgDAADBACPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 00810_I171_FC2082AABXX_L1_TUPrvgDAADBACPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156639  (Link to NCBI )
Experiment Title 100913_I120_FC80391ABXX_L8_TUPrvgDAADBACPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100913_I120_FC80391ABXX_L8_TUPrvgDAADBACPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX156658  (Link to NCBI )
Experiment Title 100913_I244_FC209MWABXX_L5_TUPrvgDABDWAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 100913_I244_FC209MWABXX_L5_TUPrvgDABDWAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
 
SRA Experiment Id SRX156659  (Link to NCBI )
Experiment Title 101001_I120_FC8052CABXX_L2_TUPrvgDABDWAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name 101001_I120_FC8052CABXX_L2_TUPrvgDABDWAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 98
PROJECT COMPOSITION
Study Tupaia chinensis Genome sequencing
Organism Tupaia chinensis
Analysis Projects Tupaia chinensis
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0037627
Organism Name
Tupaia chinensis  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Tupaia  
Genus Synonyms
  
Species
Tupaia chinensis  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 246437
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Scandentia  
NCBI Family
Tupaiidae  
NCBI Genus
Tupaia  
NCBI Species
Tupaia chinensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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