PROJECT INFORMATION
GOLD Project ID
Gp0037336  
Project Name
Ilumatobacter coccineum YM16-304  
Other Names
  
Legacy ER Project ID
43216  
Legacy GOLD ID
Gi0043216, Gc0043216  
NCBI BioProject Name Ilumatobacter coccineus YM16-304
NCBI BioProject ID 63297
NCBI BioProject Accession PRJDA63297
NCBI Locus Tag
YM304  
NCBI BioSample Accession SAMD00060985
PI Fujita N
Added By JGI automated process on 2013-04-02
Last Modified By Alejandro Rodriguez Mojica on 2018-07-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications International Journal of Systematic and Evolutionary Microbiology 63(Pt 9):3404-8 Ilumatobacter nonamiense sp. nov. and Ilumatobacter coccineum sp. nov., isolated from seashore sand.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Acidimicrobidae bacterium YM16-304
Organism Ilumatobacter coccineum YM16-304
Analysis Projects Ilumatobacter coccineum YM16-304
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0037336
Organism Name
Ilumatobacter coccineum YM16-304  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Ilumatobacter  
Genus Synonyms
  
Species
Ilumatobacter coccineum  
Subspecies
  
Species Synonyms
  
Strain
YM16-304  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NBRC 103263  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.24467  
Exemplar Name
Ilumatobacter coccineus  
Taxon DOI
10.1601/tx.24467  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1313172
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Acidimicrobiia  
NCBI Order
Acidimicrobiales  
NCBI Family
Ilumatobacteraceae  
NCBI Genus
Ilumatobacter  
NCBI Species
Ilumatobacter coccineus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Geologic  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sea sand
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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