PROJECT NAME
GOLD Project ID
Gp0036102  
Project Name
Lactobacillus salivarius cp400  
Other Names
  
Legacy ER Project ID
41080  
Legacy GOLD ID
Gi39277  
NCBI BioProject Name Lactobacillus salivarius genome sequencing
NCBI BioProject ID 189728
NCBI BioProject Accession
PRJEB1226  
NCBI Locus Tag
LSCP400  
NCBI BioSample Accession
SAMEA3138854  
PI
Added By JGI automated process on 2013-02-26
Last Modified By Jon Bertsch on 2014-06-14
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center The Genome Analysis Centre (United Kingdom)
Collaborating Institute
  
Funding Agency
  
Project Description
Lactobacillus salivarius is part of the vertebrate indigenous microbiota of the gastrointestinal tract, oral cavity and milk. The properties associated with some L. salivarius strainshave lead to an increasing interest in the probiotic utility of this species. Here we describe the draft genome of the pig isolate L. salivarius cp400. The genome sequence provides important insights into the genetic basis of L. salivarius gastrointestinal niche specialization.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Lactobacillus salivarius cp400
Analysis Projects Lactobacillus salivarius cp400
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
33  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0036102
Organism Name
Lactobacillus salivarius cp400  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lactobacillus  
Genus Synonyms
  
Species
Lactobacillus salivarius  
Subspecies
  
Species Synonyms
  
Strain
cp400  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1273133
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lactobacillus  
NCBI Species
Lactobacillus salivarius  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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