PROJECT INFORMATION
GOLD Project ID
Gp0035083  
Project Name
Dictyoglomus sp. OB1-4  
Other Names
  
Legacy ER Project ID
40605  
Legacy GOLD ID
  
NCBI BioProject Name Dictyoglomus sp. OB1-4
NCBI BioProject ID 310391
NCBI BioProject Accession PRJNA310391
NCBI Locus Tag
AXA78  
NCBI BioSample Accession SAMN04487903
PI Robert Kelly
Added By JGI automated process on 2013-02-08
Last Modified By JGI automated process on 2019-07-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Bioenergy
Comparative analysis
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metagenomic and genomic analysis of terrestrial hot springs at Yellowstone National Park for novel enzymes and pathways from extremely thermophilic bacteria  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Metagenomic and genomic analysis of terrestrial hot springs at Yellowstone National Park for novel enzymes and pathways from extremely thermophilic bacteria
Organism Dictyoglomus sp. OB1-4
Analysis Projects Dictyoglomus sp. OB1-4
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina MiSeq
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Tubes; Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0035083
Organism Name
Dictyoglomus sp. OB1-4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
DICTYOGLOMI  
Genus
Dictyoglomus  
Genus Synonyms
  
Species
Dictyoglomus sp.  
Subspecies
  
Species Synonyms
  
Strain
OB1-4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 28205
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Dictyoglomi  
NCBI Class
Dictyoglomia  
NCBI Order
Dictyoglomales  
NCBI Family
Dictyoglomaceae  
NCBI Genus
Dictyoglomus  
NCBI Species
Dictyoglomus sp.  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
  
Salinity
Undefined  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Hot spring
Aquatic
Fresh water
Metabolisms Xylan degrader
Phenotypes
  
Energy Sources
  

 

 

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