PROJECT INFORMATION
GOLD Project ID
Gp0034469  
Project Name
Patulibacter medicamentivorans I11  
Other Names
  
Legacy ER Project ID
39841  
Legacy GOLD ID
Gi23533  
NCBI BioProject Name Patulibacter medicamentivorans strain:I11
NCBI BioProject ID 74503
NCBI BioProject Accession PRJNA74503
NCBI Locus Tag
PAI11  
NCBI BioSample Accession SAMN02391504
PI
Added By JGI automated process on 2013-01-15
Last Modified By Galina Ovchinnikova on 2017-04-14
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Aalborg University (Denmark)
Collaborating Institute
  
Funding Agency
  
Project Description
Isolated from activated sludge with ibuprofen degradation capacity.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Biodegradation 24(5):615-30 Quantitative proteomic analysis of ibuprofen-degrading Patulibacter sp. strain I11.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Patulibacter medicamentivorans I11
Organism Patulibacter medicamentivorans I11
Analysis Projects Patulibacter medicamentivorans I11
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
74  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0034469
Organism Name
Patulibacter medicamentivorans I11  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Patulibacter  
Genus Synonyms
  
Species
Patulibacter medicamentivorans  
Subspecies
  
Species Synonyms
  
Strain
I11  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 25962  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.24313  
Exemplar Name
Patulibacter medicamentivorans  
Taxon DOI
10.1601/tx.24313  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1097667
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Thermoleophilia  
NCBI Order
Solirubrobacterales  
NCBI Family
Patulibacteraceae  
NCBI Genus
Patulibacter  
NCBI Species
Patulibacter medicamentivorans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Activated Sludge  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AGUD01000068.1
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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