PROJECT INFORMATION
GOLD Project ID
Gp0034117  
Project Name
Glaciecola pallidula DSM 14239  
Other Names
  
Legacy ER Project ID
39147  
Legacy GOLD ID
Gi22883  
NCBI BioProject Name Glaciecola pallidula DSM 14239 = ACAM 615
NCBI BioProject ID 176791
NCBI BioProject Accession PRJDB30
NCBI Locus Tag
GPAL  
NCBI BioSample Accession SAMD00036603
PI Yu-Zhong Zhang
Added By Tatiparthi Reddy on 2012-12-17
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center Shandong University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
this genome was sequnced to study the evolution and speciation of genus Glaciecola. no publication yet.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Glaciecola genome sequencing - Shandong University
Organism Glaciecola pallidula DSM 14239
Analysis Projects Glaciecola pallidula DSM 14239
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
41  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0034117
Organism Name
Glaciecola pallidula DSM 14239  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Glaciecola  
Genus Synonyms
  
Species
Glaciecola pallidula  
Subspecies
  
Species Synonyms
  
Strain
DSM 14239  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 14239  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.2847  
Exemplar Name
Glaciecola pallidula  
Taxon DOI
10.1601/tx.2847  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121922
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Alteromonadaceae  
NCBI Genus
Glaciecola  
NCBI Species
Glaciecola pallidula  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 125532
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Psychrophile  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
Pink  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Aquatic
Sea water
Metabolisms
  
Phenotypes Catalase positive
Energy Sources Chemoheterotroph

 

 

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