PROJECT INFORMATION
GOLD Project ID
Gp0033949  
Project Name
Thermogemmatispora carboxidivorans PM5  
Other Names
  
Legacy ER Project ID
38940  
Legacy GOLD ID
Gi22682  
NCBI BioProject Name Thermogemmatispora carboxidivorans strain:PM5
NCBI BioProject Accession PRJNA214300
NCBI Locus Tag
N688  
NCBI BioSample Accession SAMN02841144
PI Gary King
Added By JGI automated process on 2012-12-12
Last Modified By JGI automated process on 2022-03-14
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60007564
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX1901236  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901235  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901234  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901233  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901239  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901238  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901237  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901232  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901242  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901241  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901240  (Link to NCBI )
Experiment Title Thermogemmatispora sp. PM5
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ONGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Genomic analysis of novel thermophilic aerobic CO-oxidizing bacteria derived from a unique biofilm community
Organism Thermogemmatispora carboxidivorans PM5
Analysis Projects Thermogemmatispora carboxidivorans PM5
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
61  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0033949
Organism Name
Thermogemmatispora carboxidivorans PM5  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROFLEXI  
Genus
Thermogemmatispora  
Genus Synonyms
  
Species
Thermogemmatispora carboxidivorans  
Subspecies
  
Species Synonyms
  
Strain
PM5  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.25352  
Exemplar Name
Thermogemmatispora carboxidivorans  
Taxon DOI
10.1601/tx.25352  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1382306
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chloroflexi  
NCBI Class
Ktedonobacteria  
NCBI Order
Thermogemmatisporales  
NCBI Family
Thermogemmatisporaceae  
NCBI Genus
Thermogemmatispora  
NCBI Species
Thermogemmatispora carboxidivorans  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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