PROJECT INFORMATION
GOLD Project ID
Gp0033809  
Project Name
Streptomyces sp. CNS606  
Other Names
  
Legacy ER Project ID
38625  
Legacy GOLD ID
Gi22582  
NCBI BioProject Name Streptomyces sp. CNS606
NCBI BioProject ID 195771
NCBI BioProject Accession PRJNA195771
NCBI Locus Tag
K304  
NCBI BioSample Accession SAMN02441534
PI paul r. jensen
Added By JGI automated process on 2012-11-13
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Multiplexed sequencing for secondary metabolite discovery: the goal of this project is to generate draft genome sequences for 144 or more cultured marine actinomycetes. The focus is on marine actinomycetes that have proven to be a rich source of unusual secondary metabolites. Multiple strains derived from different locations will provide opportunities to assess secondary metabolite biosynthetic potential prior to fermentation or chemical analysis. This project provides a unique opportunity to apply genome-mining approaches to natural product discovery and to explore the genetic potential of a poorly studied group of marine bacteria.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1879599  (Link to NCBI )
Experiment Title Streptomyces sp. CNS606
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name NBSW
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Genome sequencing of the marine actinomycete Salinispora pacifica
Organism Streptomyces sp. CNS606
Analysis Projects Streptomyces sp. CNS606
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
73  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0033809
Organism Name
Streptomyces sp. CNS606  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Streptomyces  
Genus Synonyms
  
Species
Streptomyces sp.  
Subspecies
  
Species Synonyms
  
Strain
CNS606  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1305837
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptomycetales  
NCBI Family
Streptomycetaceae  
NCBI Genus
Streptomyces  
NCBI Species
Streptomyces sp. CNS606  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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