PROJECT INFORMATION
GOLD Project ID
Gp0033503  
Project Name
Thermocrinis jamiesonii GBS1  
Other Names
  
Legacy ER Project ID
38663  
Legacy GOLD ID
Gi22606  
NCBI BioProject Name Thermocrinis sp. GBS
NCBI BioProject ID 195645
NCBI BioProject Accession PRJNA195645
NCBI Locus Tag
K217  
NCBI BioSample Accession SAMN02841145
PI Brian Hedlund
Added By JGI automated process on 2012-11-13
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Genome announcements High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1758588  (Link to NCBI )
Experiment Title Thermocrinis sp. GBS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name NCHU
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Sequencing the genomes of two abundant thermophiles in Great Basin hot springs: Thermocrinis jamiesonii and novel Chloroflexi Thermoflexus hugenholtzii
Organism Thermocrinis jamiesonii GBS1
Analysis Projects Thermocrinis jamiesonii GBS1
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
41  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0033503
Organism Name
Thermocrinis jamiesonii GBS1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
AQUIFICAE  
Genus
Thermocrinis  
Genus Synonyms
  
Species
Thermocrinis jamiesonii  
Subspecies
  
Species Synonyms
  
Strain
GBS1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.27894  
Exemplar Name
Thermocrinis jamiesonii  
Taxon DOI
10.1601/tx.27894  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1313265
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Aquificae  
NCBI Class
Aquificae  
NCBI Order
Aquificales  
NCBI Family
Aquificaceae  
NCBI Genus
Thermocrinis  
NCBI Species
Thermocrinis sp. GBS  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Microaerophilic  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Autotroph

 

 

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