PROJECT INFORMATION
GOLD Project ID
Gp0033263  
Project Name
Acidipropionibacterium acidipropionici ATCC 4875  
Other Names
Propionibacterium acidipropionici ATCC 4875  
Legacy ER Project ID
38175  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Heather Koshinsky
Added By Jennifer Kyle on 2012-11-05
Last Modified By Supratim Mukherjee on 2017-03-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Eureka genomics (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Phylogeny project for Propionibacteria  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Propionibacteria phylogeny project
Organism Acidipropionibacterium acidipropionici ATCC 4875
Analysis Projects Acidipropionibacterium acidipropionici ATCC 4875
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 4: Annotation-Directed
Finishing Goal Level 5: Non-contiguous Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Indexed Paired End  
Number Of Reads
14,578,372  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0021484
Organism Name
Acidipropionibacterium acidipropionici ATCC 4875  
Other names (alias, synonyms, short names, common names)
Propionibacterium acidipropionici ATCC 4875  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Acidipropionibacterium  
Genus Synonyms
Propionibacterium  
Species
Acidipropionibacterium acidipropionici  
Subspecies
  
Species Synonyms
  
Strain
ATCC 4875  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 4875  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1171373
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Propionibacteriales  
NCBI Family
Propionibacteriaceae  
NCBI Genus
Acidipropionibacterium  
NCBI Species
Acidipropionibacterium acidipropionici  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Dairy products  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 35172
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats Dairy isolates
Metabolisms
  
Phenotypes
  
Energy Sources
  
EXPERIMENT
Experimental Conditions
Reinforced Clostridial Medium, 37C  

 

 

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