Studies
|
56,334 |
|
Biosamples
|
196,986 |
|
Sequencing Projects
|
525,358 |
|
Analysis Projects
|
385,008 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0032113
|
|
Project Name
|
Gemmatimonadetes bacterium SCGC AAA240-J22
|
|
Other Names
|
|
|
Legacy ER Project ID
|
37068
|
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Legacy GOLD ID
|
Gi22461
|
| NCBI BioProject Name | Gemmatimonadetes bacterium SCGC AAA240-J22 |
|
NCBI BioProject Accession
|
PRJNA190859 |
|
NCBI Locus Tag
|
H999
|
|
NCBI BioSample Accession
|
SAMN02441437 |
|
Source Sample ID
|
|
| PI | Ramunas Stepanauskas |
| Added By | JGI automated process on 2012-10-31 |
| Last Modified By | JGI automated process on 2023-02-27 |
| Project Comments |
|
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Project Status
|
Permanent Draft
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Project Relevance
|
|
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Sequencing Center
|
Bigelow Laboratory Single Cell Genomics Center (SCGC)
(USA)
DOE Joint Genome Institute (JGI) (USA) |
|
Collaborating Institute
|
|
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Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Dark ocean microbial single-cell genomics. This is a reference genome for studying planktonic microorganisms from the ocean below 200 m. Genomes from predominant dark-ocean clades will improve interpretation of metagenomic, metatranscriptomic and metaproteomic data to better understand metabolic features and ecological roles of the microbial groups. We focus on microbes without representation in laboratory cultures or genome sequencing projects, as well as chemoautotrophic groups, which likely have a major impact on the global carbon cycle.
|
| Is JGI Project |
Yes
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
Unrestricted
|
|
JGI Award DOI
|
10.46936/10.25585/60000688 |
| JGI Portal Download | Raw Sequence Data |
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Dark ocean microbial single cell genomics |
| Organism |
Gemmatimonadetes bacterium SCGC AAA240-J22 |
| Analysis Projects |
|
| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
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Finishing Goal
|
Level 1: Standard Draft |
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Contamination Screening Input
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DNA Amplification Method
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Sorting Technology
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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|
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NextSeq-HO |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
52
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0032113 |
| Organism Name |
Gemmatimonadetes bacterium SCGC AAA240-J22
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
GEMMATIMONADOTA
|
| Genus |
|
| Genus Synonyms |
|
| Species |
Gemmatimonadetes bacterium SCGC AAA240-J22
|
| Subspecies |
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| Species Synonyms |
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| Strain |
SCGC AAA240-J22
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
No
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| Culture Type |
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| Organism Type |
Natural
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| Uncultured Type |
Single Cell
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
939714 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
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| NCBI Phylum |
Gemmatimonadota
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| NCBI Class |
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| NCBI Order |
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| NCBI Family |
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| NCBI Genus |
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| NCBI Species |
Gemmatimonadetes bacterium SCGC AAA240-J22
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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