Studies
|
49,592 |
|
Biosamples
|
132,357 |
|
Sequencing Projects
|
409,872 |
|
Analysis Projects
|
321,255 |
| Organisms | 410,919 |
| PROJECT INFORMATION | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
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Gp0028719
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Project Name
|
Bacillus psychrosaccharolyticus ATCC 23296
|
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Other Names
|
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Legacy ER Project ID
|
30906
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Legacy GOLD ID
|
Gpto30906, Gi21950
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| NCBI BioProject Name | Bacillus psychrosaccharolyticus ATCC 23296 | ||||||||||||||||||||
|
NCBI BioProject ID
|
159255 |
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NCBI BioProject Accession
|
PRJNA159255 |
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NCBI Locus Tag
|
WYK
|
||||||||||||||||||||
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NCBI BioSample Accession
|
SAMN00857837 |
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| PI | |||||||||||||||||||||
| Added By |
JGI automated process
on 2012-10-16 |
||||||||||||||||||||
| Last Modified By |
JGI automated process
on 2014-03-26 |
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| Project Comments |
|
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Project Status
|
Permanent Draft
|
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Project Relevance
|
Industrial |
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Sequencing Center
|
Complutense University of Madrid
(Spain)
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Collaborating Institute
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Funding Agency
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Project Description
|
Bacillus psychrosaccharolyticus Genome Sequencing Project.
|
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| Is JGI Project |
No
|
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Project Information Visibility
|
Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
|
Specimen
|
Organism |
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Nucleic Acid
|
DNA |
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Sequencing Strategy
|
Whole Genome Sequencing
|
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||
|
Project Information
|
|
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Database
|
|
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Genome Publications
|
Genome announcements
Genome of the Psychrophilic Bacterium Bacillus psychrosaccharolyticus, a Potential Source of 2'-Deoxyribosyltransferase for Industrial Nucleoside Synthesis.
|
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Other Publications
|
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Bacillus psychrosaccharolyticus ATCC 23296 |
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| Organism |
Bacillus psychrosaccharolyticus ATCC 23296 |
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| Analysis Projects |
Bacillus psychrosaccharolyticus ATCC 23296 |
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| Number of Analysis Projects (AP) |
1 |
||||||||||||||||||||
| Number of Derived Analyis Projects (DAP) |
0
|
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
454 |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
39
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0028719 |
| Organism Name |
Bacillus psychrosaccharolyticus ATCC 23296
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Bacillus
|
| Genus Synonyms |
|
| Species |
Bacillus psychrosaccharolyticus
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
ATCC 23296
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
ATCC 23296
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.4969
|
| Exemplar Name |
Peribacillus psychrosaccharolyticus
|
| Taxon DOI |
10.1601/tx.36089
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1174504 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Firmicutes
|
| NCBI Class |
Bacilli
|
| NCBI Order |
Bacillales
|
| NCBI Family |
Bacillaceae
|
| NCBI Genus |
Peribacillus
|
| NCBI Species |
Peribacillus psychrosaccharolyticus
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Soil
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
X60635 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Soil |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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