Studies
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56,335 |
|
Biosamples
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196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0025977
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Project Name
|
Gemmatimonadetes bacterium JGI 0000112-M07
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Other Names
|
|
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Legacy ER Project ID
|
29572
|
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Legacy GOLD ID
|
Gi0029572
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| NCBI BioProject Name | Gemmatimonadetes bacterium JGI 0000112-M07 |
|
NCBI BioProject Accession
|
PRJNA176564 |
|
NCBI Locus Tag
|
C991
|
|
NCBI BioSample Accession
|
SAMN02441416 |
|
Source Sample ID
|
|
| PI | John Gladden |
| Added By | JGI automated process on 2012-09-25 |
| Last Modified By | JGI automated process on 2023-01-09 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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|
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
|
Sequencing of isolates from a thermophilic cellulose-adapted microbial community. A compost derived microbial community was enriched on cellulose, which selected for several thermophilic bacteria. Some of these bacterial species could not be cultivated and therefore single cells from the community were isolated and sequenced to better understand and their role in the community.
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
Unrestricted
|
|
JGI Award DOI
|
10.46936/10.25585/60001413 |
| JGI Portal Download | Raw Sequence Data |
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
4 feedstock-adapted communities x 100 Mb |
| Organism |
Gemmatimonadetes bacterium JGI 0000112-M07 |
| Analysis Projects |
Gemmatimonadetes bacterium JGI 0000112-M07 (unscreened) |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
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Finishing Goal
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Level 1: Standard Draft |
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Contamination Screening Input
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DNA Amplification Method
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Sorting Technology
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
58
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0025977 |
| Organism Name |
Gemmatimonadetes bacterium JGI 0000112-M07
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
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| Phylogeny |
GEMMATIMONADOTA
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| Genus |
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| Genus Synonyms |
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| Species |
Gemmatimonadetes bacterium JGI 0000112-M07
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| Subspecies |
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| Species Synonyms |
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| Strain |
JGI 0000112-M07
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
No
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| Culture Type |
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| Organism Type |
Natural
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| Uncultured Type |
Single Cell
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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|
| NCBI Taxonomy ID |
1239290 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
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| NCBI Phylum |
Gemmatimonadota
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| NCBI Class |
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| NCBI Order |
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| NCBI Family |
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| NCBI Genus |
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| NCBI Species |
Gemmatimonadetes bacterium JGI 0000112-M07
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| CYANOBACTERIA METADATA | |
| Filaments |
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| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
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| Complementary chromatic adaptation (CCA) |
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| Medium Types |
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