Studies
|
56,336 |
|
Biosamples
|
196,965 |
|
Sequencing Projects
|
525,338 |
|
Analysis Projects
|
385,100 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0025792
|
|
Project Name
|
Desulfobulbus sp. oral taxon 041 Dsb1-5
|
|
Other Names
|
|
|
Legacy ER Project ID
|
29287
|
|
Legacy GOLD ID
|
Gi0043234, Gi0029287
|
| NCBI BioProject Name | Desulfobulbus sp. oral taxon 041 str. Dsb1-5 |
|
NCBI BioProject Accession
|
PRJNA188735 |
|
NCBI Locus Tag
|
|
|
NCBI BioSample Accession
|
SAMN02470741 |
|
Source Sample ID
|
|
| PI | Mircea Podar |
| Added By | Alisha Campbell on 2012-09-23 |
| Last Modified By | Supratim Mukherjee on 2017-03-20 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Human Oral Microbiome Project (HOMP) |
|
Sequencing Center
|
Oak Ridge National Laboratory
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Oral microbiome single cell genomics.
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
PloS one: 8(3):e59361 Multiple single-cell genomes provide insight into functions of uncultured Deltaproteobacteria in the human oral cavity. PubMed: 23555659 DOI: 10.1371/journal.pone.0059361 |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Oral microbiome single cell genomics |
| Organism |
Desulfobulbus sp. oral taxon 041 Dsb1-5 |
| Analysis Projects |
Desulfobulbus sp. oral taxon 041 Dsb1-5 (unscreened) |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sorting Technology
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2000 |
|
Library Method
(MIGS-28)
|
Illumina 300bp PE, Illumina Std PE
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
59
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0025792 |
| Organism Name |
Desulfobulbus sp. oral taxon 041 Dsb1-5
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
THERMODESULFOBACTERIOTA
|
| Genus |
Desulfobulbus
|
| Genus Synonyms |
|
| Species |
Desulfobulbus sp. oral taxon 041
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Dsb1-5
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
No
|
| Culture Type |
|
| Organism Type |
Natural
|
| Uncultured Type |
Single Cell
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1292046 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Thermodesulfobacteriota
|
| NCBI Class |
Desulfobulbia
|
| NCBI Order |
Desulfobulbales
|
| NCBI Family |
Desulfobulbaceae
|
| NCBI Genus |
Desulfobulbus
|
| NCBI Species |
Desulfobulbus sp. oral taxon 041
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Oral cavity
|
| Specific Ecosystem |
Subgingival plaque
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Host Oral cavity |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
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