PROJECT INFORMATION
GOLD Project ID
Gp0025572  
Project Name
Acetomicrobium hydrogeniformans ATCC BAA-1850  
Other Names
Anaerobaculum hydrogeniformans ATCC BAA-1850  
Legacy ER Project ID
29125  
Legacy GOLD ID
Gi0029125  
NCBI BioProject Name Anaerobaculum hydrogeniformans ATCC BAA-1850
NCBI BioProject Accession PRJNA33123
NCBI Locus Tag
HMPREF1705  
NCBI BioSample Accession SAMN00009040
Source Sample ID
PI Gordon J; Mitreva M
Added By Makedonka Mitreva on 2012-09-07
Last Modified By Hema Katta on 2018-11-01
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Human Gut Microbiome Initiative (HGMI)
Medical
Sequencing Center Washington University (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
A reference genome for the Human Microbiome Project.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Genome announcements: Genome Sequence of Acetomicrobium hydrogeniformans OS1.
PubMed: 29954899 DOI: e00581-18
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX017038  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 2753971320
Library Layout PAIRED
Library Instrument 454 GS FLX
PROJECT COMPOSITION
Study Anaerobaculum hydrogeniformans strain 0S1 ATCC BAA-1850
Organism Acetomicrobium hydrogeniformans ATCC BAA-1850
Analysis Projects Acetomicrobium hydrogeniformans ATCC BAA-1850
Acetomicrobium hydrogeniformans ATCC BAA-1850
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Sanger
454
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0025572
Organism Name
Acetomicrobium hydrogeniformans ATCC BAA-1850  
Other names (alias, synonyms, short names, common names)
Anaerobaculum hydrogeniformans ATCC BAA-1850  
Organism Domain
BACTERIAL  
Phylogeny
SYNERGISTOTA  
Genus
Acetomicrobium  
Genus Synonyms
Anaerobaculum  
Species
Acetomicrobium hydrogeniformans  
Subspecies
  
Species Synonyms
  
Strain
ATCC BAA-1850  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC BAA-1850  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.22933  
Exemplar Name
Acetomicrobium hydrogeniformans  
Taxon DOI
10.1601/tx.28322  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 592015
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Synergistota  
NCBI Class
Synergistia  
NCBI Order
Synergistales  
NCBI Family
Acetomicrobiaceae  
NCBI Genus
Acetomicrobium  
NCBI Species
Acetomicrobium hydrogeniformans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Industrial wastewater  
Ecosystem Subtype
Petrochemical  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Human intestinal microflora
Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  
HMP METADATA
HMP ID
1705  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
Intestinal tract  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Rob Gunsalus  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-10-14  
Date Sequencing Begins
2009-01-02  
Date Draft Sequencing Completed
2009-03-20  
Cross Reference ID
  

 

 

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