Studies
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56,017 |
|
Biosamples
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183,993 |
|
Sequencing Projects
|
508,011 |
|
Analysis Projects
|
381,487 |
| Organisms | 480,461 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0025375
|
|
Project Name
|
Rhodonellum psychrophilum GCM71, DSM 17998
|
|
Other Names
|
Rhodonellum psychrophilum
|
|
Legacy ER Project ID
|
30593
|
|
Legacy GOLD ID
|
Gi0030593
|
| NCBI BioProject Name | Rhodonellum psychrophilum GCM71 = DSM 17998 |
|
NCBI BioProject Accession
|
PRJNA219509 |
|
NCBI Locus Tag
|
P872
|
|
NCBI BioSample Accession
|
SAMN02471707 |
|
Source Sample ID
|
|
| PI | Mikkel Andreas Glaring |
| Added By | Mikkel Andreas Glaring on 2012-10-03 |
| Last Modified By | JGI automated process on 2014-08-18 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Evolution Biotechnological |
|
Sequencing Center
|
Fastetis SA Geneva
(Switzerland)
|
|
Collaborating Institute
|
University of Copenhagen
(Denmark)
|
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Funding Agency
|
|
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Project Description
|
Genome sequence of the psychroalkaliphile Rhodonellum psychrophilum isolated from the submarine ikaite tufa columns in the Ikka Fjord, Southwest Greenland.
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
Genome announcements: Draft Genome Sequence of the Psychrophilic and Alkaliphilic Rhodonellum psychrophilum Strain GCM71T. PubMed: 24309741 DOI: 10.1128/genomeA.01014-13 |
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Other Publications
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|
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Rhodonellum psychrophilum |
| Organism |
Rhodonellum psychrophilum GCM71, DSM 17998 |
| Analysis Projects |
Rhodonellum psychrophilum GCM71, DSM 17998 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
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Contamination Screening Input
|
|
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DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
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Single Cell Lysis Approach
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|
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Sequencing Comments
|
|
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DNA Amplification Kit
|
|
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Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2000 |
|
Library Method
(MIGS-28)
|
Illumina Std PE
|
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Library Layout
|
|
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
|
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| GC Percent |
42
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0013220 |
| Organism Name |
Rhodonellum psychrophilum GCM71, DSM 17998
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
BACTEROIDETES
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| Genus |
Rhodonellum
|
| Genus Synonyms |
|
| Species |
Rhodonellum psychrophilum
|
| Subspecies |
|
| Species Synonyms |
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| Strain |
GCM71
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 17998
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.10995
|
| Exemplar Name |
Rhodonellum psychrophilum
|
| Taxon DOI |
10.1601/tx.10995
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1123057 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Bacteroidota
|
| NCBI Class |
Cytophagia
|
| NCBI Order |
Cytophagales
|
| NCBI Family |
Cytophagaceae
|
| NCBI Genus |
Rhodonellum
|
| NCBI Species |
Rhodonellum psychrophilum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Geologic
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
690429 |
| Genbank 16S ID |
DQ112660 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
|
| Temperature Range |
Psychrophile
|
| Salinity |
|
| pH |
7.5
|
| Cell Diameter |
0.7-1.0 um
|
| Cell Length |
0.8-3.0 um
|
| Color |
Red
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Rock Endolithic Submarine Arctic |
| Metabolisms |
|
| Phenotypes |
Alkaliphile |
| Energy Sources |
Chemoheterotroph |
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
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| Position Of Heterocysts |
|
| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
|
| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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