PROJECT INFORMATION | |
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GOLD Project ID
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Gp0025375
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Project Name
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Rhodonellum psychrophilum GCM71, DSM 17998
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Other Names
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Rhodonellum psychrophilum
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Legacy ER Project ID
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30593
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Legacy GOLD ID
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Gi0030593
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NCBI BioProject Name | Rhodonellum psychrophilum GCM71 = DSM 17998 |
NCBI BioProject Accession
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PRJNA219509 |
NCBI Locus Tag
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P872
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NCBI BioSample Accession
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SAMN02471707 |
Source Sample ID
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PI | Mikkel Andreas Glaring |
Added By | Mikkel Andreas Glaring on 2012-10-03 |
Last Modified By | JGI automated process on 2014-08-18 |
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Evolution Biotechnological |
Sequencing Center
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Fastetis SA Geneva
(Switzerland)
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Collaborating Institute
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University of Copenhagen
(Denmark)
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Funding Agency
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Project Description
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Genome sequence of the psychroalkaliphile Rhodonellum psychrophilum isolated from the submarine ikaite tufa columns in the Ikka Fjord, Southwest Greenland.
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Genome announcements: Draft Genome Sequence of the Psychrophilic and Alkaliphilic Rhodonellum psychrophilum Strain GCM71T. PubMed: 24309741 DOI: 10.1128/genomeA.01014-13 |
Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Rhodonellum psychrophilum |
Organism |
Rhodonellum psychrophilum GCM71, DSM 17998 |
Analysis Projects |
Rhodonellum psychrophilum GCM71, DSM 17998 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
Finishing Goal
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Level 1: Standard Draft |
Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2000 |
Library Method
(MIGS-28)
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Illumina Std PE
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
42
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0013220 |
Organism Name |
Rhodonellum psychrophilum GCM71, DSM 17998
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
BACTEROIDETES
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Genus |
Rhodonellum
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Genus Synonyms |
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Species |
Rhodonellum psychrophilum
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Subspecies |
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Species Synonyms |
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Strain |
GCM71
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
DSM 17998
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Type Strain |
Yes
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Exemplar DOI |
10.1601/ex.10995
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Exemplar Name |
Rhodonellum psychrophilum
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Taxon DOI |
10.1601/tx.10995
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
1123057 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Bacteroidota
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NCBI Class |
Cytophagia
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NCBI Order |
Cytophagales
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NCBI Family |
Cytophagaceae
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NCBI Genus |
Rhodonellum
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NCBI Species |
Rhodonellum psychrophilum
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ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
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Ecosystem Category |
Terrestrial
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Ecosystem Type |
Geologic
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Ecosystem Subtype |
Unclassified
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Specific Ecosystem |
Unclassified
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
690429 |
Genbank 16S ID |
DQ112660 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Aerobe
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Cell Shape |
Rod-shaped
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Motility |
Nonmotile
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Sporulation |
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Temperature Range |
Psychrophile
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Salinity |
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pH |
7.5
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Cell Diameter |
0.7-1.0 um
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Cell Length |
0.8-3.0 um
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Color |
Red
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Gram Staining |
Gram-
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
Rock Endolithic Submarine Arctic |
Metabolisms |
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Phenotypes |
Alkaliphile |
Energy Sources |
Chemoheterotroph |
CYANOBACTERIA METADATA | |
Filaments |
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Filament Type |
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Differentiated Cells |
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Position Of Heterocysts |
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Cysts |
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Mode Of Reproduction |
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Trichome |
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Trichome Type |
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Carotenoids |
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Pigments |
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Phage Infectivity |
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Phage Type |
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Restriction Enzyme |
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Toxin Production |
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Toxin Type |
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Secondary Metabolites |
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Developmental Cycle |
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Branching |
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Gas Vesicles |
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Gas Vesicle Type |
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Diagnostic Inclusion Body Information |
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Extracellular Structures |
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Bloom Forming |
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Pigment Type |
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Complementary chromatic adaptation (CCA) |
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Medium Types |
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