PROJECT INFORMATION
GOLD Project ID
Gp0024397  
Project Name
Rhizopus microsporus sv. van Tieghem  
Other Names
  
Legacy ER Project ID
30053  
Legacy GOLD ID
Gi21428  
NCBI BioProject Name Rhizopus microsporus ATCC 52813
NCBI BioProject ID 205957
NCBI BioProject Accession PRJNA205957
NCBI Locus Tag
M012  
NCBI BioSample Accession SAMN02745869
PI Joseph Spatafora
Added By JGI automated process on 2012-09-25
Last Modified By JGI automated process on 2019-11-10
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 113(52):15102-15107 Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX871850  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name GOGC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX871851  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GNAG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study 1000 Fungal Genomes
Organism Rhizopus microsporus sv. van Tieghem
Analysis Projects Rhizopus microsporus sv. van Tieghem
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0024397
Organism Name
Rhizopus microsporus sv. van Tieghem  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-MUCOROMYCOTA  
Genus
Rhizopus  
Genus Synonyms
  
Species
Rhizopus microsporus  
Subspecies
  
Species Synonyms
  
Strain
ATCC 52813  
Strain Synonyms
  
Serovar/Cultivar
van Tieghem  
Culture Collection ID
ATCC 52813  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1340429
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Mucoromycota  
NCBI Class
Mucoromycetes  
NCBI Order
Mucorales  
NCBI Family
Rhizopodaceae  
NCBI Genus
Rhizopus  
NCBI Species
Rhizopus microsporus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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