PROJECT INFORMATION
GOLD Project ID
Gp0023644  
Project Name
Pseudothermotoga hypogea NBRC 106472  
Other Names
Thermotoga hypogea NBRC 106472  
Legacy ER Project ID
28911  
Legacy GOLD ID
Gi20871, Gc0028911  
NCBI BioProject Name Thermotoga hypogea NBRC 106472
NCBI BioProject Accession PRJDB362
NCBI Locus Tag
THY01S  
NCBI BioSample Accession SAMD00061031
Source Sample ID
PI Unknown
Added By JGI automated process on 2012-08-29
Last Modified By Alejandro Rodriguez Mojica on 2018-07-20
Project Comments
A new thermophilic, xylanolytic, strictly anaerobic, rod-shaped bacterium, strain SEBR 7054T, was isolated from an African oil-producing well. Based on the presence of an outer sheath (toga) and 16S rRNA sequence analysis data, this organism was identified as a member of the genus Thermotoga. Strain SEBR 7054T possessed lateral flagella, had a G + C content of 50 mol%, produced traces of ethanol from glucose but no lactate, and grew optimally in the presence of 0 to 0.2% NaCl at 70 degrees C. Its phenotypic and phylogenetic characteristics clearly differed from those reported for the five previously validly described Thermotoga species. Therefore, we propose that strain SEBR 7054T is a member of a new species of the genus Thermotoga, Thermotoga hypogea sp. nov. The type strain of T. hypogea is SEBR 7054 (= DSM 11164).  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Comparative genomics of environmental Thermotoga isolates  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications International journal of systematic bacteriology: 47(4):1013-9 Thermotoga hypogea sp. nov., a xylanolytic, thermophilic bacterium from an oil-producing well.
PubMed: 9336900
Other Publications
  
Ignored Publications
  
Unassigned Publications International Journal of Systematic and Evolutionary Microbiology: 64(Pt 6):2128-36 Thermotoga profunda sp. nov. and Thermotoga caldifontis sp. nov., anaerobic thermophilic bacteria isolated from terrestrial hot springs.
PubMed: 24676729 DOI: 10.1099/ijs.0.060137-0
SRA Experiment
  
PROJECT COMPOSITION
Study Thermotoga hypogea NBRC 106472
Organism Pseudothermotoga hypogea NBRC 106472
Analysis Projects Pseudothermotoga hypogea NBRC 106472
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
49  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0023644
Organism Name
Pseudothermotoga hypogea NBRC 106472  
Other names (alias, synonyms, short names, common names)
Thermotoga hypogea NBRC 106472  
Organism Domain
BACTERIAL  
Phylogeny
THERMOTOGAE  
Genus
Pseudothermotoga  
Genus Synonyms
Thermotoga  
Species
Pseudothermotoga hypogea  
Subspecies
  
Species Synonyms
  
Strain
NBRC 106472  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NBRC 106472  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123384
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Thermotogae  
NCBI Class
Thermotogae  
NCBI Order
Thermotogales  
NCBI Family
Thermotogaceae  
NCBI Genus
Pseudothermotoga  
NCBI Species
Pseudothermotoga hypogea  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Oil reservoir  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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