PROJECT INFORMATION
GOLD Project ID
Gp0023642  
Project Name
Pseudothermotoga subterranea NBRC 107924  
Other Names
Thermotoga subterranea NBRC 107924  
Legacy ER Project ID
28909  
Legacy GOLD ID
Gi20869  
NCBI BioProject Name Thermotoga subterranea NBRC 107924
NCBI BioProject Accession PRJDB360
NCBI Locus Tag
TSU01S  
NCBI BioSample Accession
Source Sample ID
PI Unknown
Added By JGI automated process on 2012-08-29
Last Modified By Supratim Mukherjee on 2017-03-08
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Comparative genomics of environmental Thermotoga isolates  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Archives of microbiology: 164(2):91-7 Thermotoga subterranea sp. nov., a new thermophilic bacterium isolated from a continental oil reservoir.
PubMed: 8588738
SRA Experiment
  
PROJECT COMPOSITION
Study Thermotoga subterranea NBRC 107924
Organism Pseudothermotoga subterranea NBRC 107924
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0023642
Organism Name
Pseudothermotoga subterranea NBRC 107924  
Other names (alias, synonyms, short names, common names)
Thermotoga subterranea NBRC 107924  
Organism Domain
BACTERIAL  
Phylogeny
THERMOTOGAE  
Genus
Pseudothermotoga  
Genus Synonyms
Thermotoga  
Species
Pseudothermotoga subterranea  
Subspecies
  
Species Synonyms
  
Strain
NBRC 107924  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NBRC 107924  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123385
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Thermotogae  
NCBI Class
Thermotogae  
NCBI Order
Thermotogales  
NCBI Family
Thermotogaceae  
NCBI Genus
Pseudothermotoga  
NCBI Species
Pseudothermotoga subterranea  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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