Studies
|
43,778 |
|
Biosamples
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100,585 |
|
Sequencing Projects
|
345,923 |
|
Analysis Projects
|
271,587 |
| Organisms | 378,864 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0023263
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Project Name
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Thermacetogenium phaeum PB, DSM 12270
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Other Names
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Legacy ER Project ID
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28002
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Legacy GOLD ID
|
Gi20016, Gc0028002
|
| NCBI BioProject Name | Thermacetogenium phaeum DSM 12270 strain:PB |
|
NCBI BioProject ID
|
168373 |
|
NCBI BioProject Accession
|
PRJNA168373 |
|
NCBI Locus Tag
|
TPH
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NCBI BioSample Accession
|
|
| PI | G2L Team |
| Added By |
G2L Team
on 2012-07-30 |
| Last Modified By |
JGI automated process
on 2014-05-20 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Environmental |
|
Sequencing Center
|
Goettingen Genomics Laboratory
(Germany)
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Collaborating Institute
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Funding Agency
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Project Description
|
Thermacetogenium phaeum is a strictly anaerobic, homoacetogenic bacterium. It is exceptional because it can use the homoacetogenic Wood-Ljungdahl (CO- dehydrogenase) pathway both for acetate formation and acetate oxidation. Acetate oxidation is possible only in syntrophic cooperation with a methanogenic partner which maintains a low hydrogen and/or formate concentration in the coculture. With this, the bacterium operates close to the thermodynamic equilibrium of substrate conversion, similar to other syntrophically fermenting bacteria such as Syntrophomonas wolfei the genomes of which have been sequenced as well in the recent past.
|
| Is JGI Project |
No
|
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
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Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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|
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Genome Publications
|
BMC genomics
13(723):723
Genome-guided analysis of physiological and morphological traits of the fermentative acetate oxidizer Thermacetogenium phaeum.
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Thermacetogenium phaeum DSM 12270 |
| Organism |
Thermacetogenium phaeum PB |
| Analysis Projects |
Thermacetogenium phaeum PB, DSM 12270 |
| Number of Analysis Projects (AP) |
1
|
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
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Sequencing Comments
|
|
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Sequencing Technology
(MIGS-29)
|
Sanger 454 GS FLX Titanium Illumina |
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Library Method
(MIGS-28)
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Number Of Reads
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|
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Read Size
|
|
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Vector
|
|
| GC Percent |
54
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| Chromosome Count |
1
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| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0015017 |
| Organism Name |
Thermacetogenium phaeum PB
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Thermacetogenium
|
| Genus Synonyms |
|
| Species |
Thermacetogenium phaeum
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
PB
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 12270
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.4541
|
| Exemplar Name |
Thermacetogenium phaeum
|
| Taxon DOI |
10.1601/tx.4541
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1089553 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Firmicutes
|
| NCBI Class |
Clostridia
|
| NCBI Order |
Thermoanaerobacterales
|
| NCBI Family |
Thermoanaerobacteraceae
|
| NCBI Genus |
Thermacetogenium
|
| NCBI Species |
Thermacetogenium phaeum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
|
| Ecosystem Category |
Wastewater
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Sporulating
|
| Temperature Range |
Thermophile
|
| Salinity |
|
| pH |
6.8
|
| Cell Diameter |
0.4-0.7
|
| Cell Length |
2.0-12.6
|
| Color |
|
| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Aquatic Paper mill Wastewater treatment plant Wastewater |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
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| Medium Types |
|
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