PROJECT NAME
GOLD Project ID
Gp0021482  
Project Name
Pectobacterium wasabiae CFBP 3304  
Other Names
  
Legacy ER Project ID
25526  
Legacy GOLD ID
Gi17699  
NCBI BioProject Name Pectobacterium wasabiae CFBP 3304
NCBI BioProject ID 159625
NCBI BioProject Accession
PRJNA159625  
NCBI Locus Tag
Y17  
NCBI BioSample Accession
SAMN02471791  
PI
Added By JGI automated process on 2012-05-18
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center University of Helsinki (Finland)
Collaborating Institute
  
Funding Agency
  
Project Description
Type strain of Pectobacterium wasabiae  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PLoS pathogens 8(11):e1003013 Revised phylogeny and novel horizontally acquired virulence determinants of the model soft rot phytopathogen Pectobacterium wasabiae SCC3193.
Other Publications
  
PROJECT COMPOSITION
Studies Pectobacterium wasabiae CFBP 3304
Analysis Projects Pectobacterium wasabiae CFBP 3304
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAiix
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0021482
Organism Name
Pectobacterium wasabiae CFBP 3304  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pectobacterium  
Genus Synonyms
  
Species
Pectobacterium wasabiae  
Subspecies
  
Species Synonyms
  
Strain
CFBP 3304  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 43316  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3178  
Exemplar Name
Pectobacterium wasabiae  
Taxon DOI
10.1601/tx.3254  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1175631
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Pectobacteriaceae  
NCBI Genus
Pectobacterium  
NCBI Species
Pectobacterium wasabiae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 153801
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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