PROJECT INFORMATION | |
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GOLD Project ID
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Gp0021417
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Project Name
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Micavibrio sp. EPB
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Other Names
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Legacy ER Project ID
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25502
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Legacy GOLD ID
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Gi17675, Gc0025502
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NCBI BioProject Name | Micavibrio aeruginosavorus EPB |
NCBI BioProject Accession
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PRJNA163341 |
NCBI Locus Tag
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A11S
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NCBI BioSample Accession
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SAMN02604326 |
Source Sample ID
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PI | zohar pasternak |
Added By | JGI automated process on 2012-05-18 |
Last Modified By | Alejandro Rodriguez Mojica on 2018-07-12 |
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Environmental |
Sequencing Center
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Weizmann Institute of Science
(Israel)
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Collaborating Institute
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Funding Agency
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Project Description
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Predatory epibiotic bacterium.
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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The ISME journal: 7(4):756-69 By their genes ye shall know them: genomic signatures of predatory bacteria. PubMed: 23190728 DOI: 10.1038/ismej.2012.149 |
Other Publications
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Ignored Publications
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Unassigned Publications
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Environmental microbiology: 8(12):2179-88 A new alpha-proteobacterial clade of Bdellovibrio-like predators: implications for the mitochondrial endosymbiotic theory. PubMed: 17107559 Environmental microbiology: 8(9):1667-73 Structure analysis of a soil community of predatory bacteria using culture-dependent and culture-independent methods reveals a hitherto undetected diversity of Bdellovibrio-and-like organisms. PubMed: 16913926 |
SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Micavibrio sp. EPB |
Organism |
Micavibrio sp. EPB |
Analysis Projects |
Micavibrio sp. EPB |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
55
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Chromosome Count |
1
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Plasmid Count |
0
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ORGANISM NAME | |
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GOLD Organism ID |
Go0021417 |
Organism Name |
Micavibrio sp. EPB
|
Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
PROTEOBACTERIA-ALPHA
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Genus |
Micavibrio
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Genus Synonyms |
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Species |
Micavibrio aeruginosavorus
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Subspecies |
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Species Synonyms |
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Strain |
EPB
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
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Type Strain |
Unknown
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Exemplar DOI |
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Exemplar Name |
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Taxon DOI |
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
349215 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Bdellovibrionota
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NCBI Class |
Bdellovibrionia
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NCBI Order |
Bdellovibrionales
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NCBI Family |
Pseudobdellovibrionaceae
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NCBI Genus |
Micavibrio
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NCBI Species |
Micavibrio aeruginosavorus
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ISOLATION CLASSIFICATION | |
Ecosystem |
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Ecosystem Category |
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Ecosystem Type |
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Ecosystem Subtype |
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Specific Ecosystem |
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
Gram-
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
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Metabolisms |
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Phenotypes |
Predatory |
Energy Sources |
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