PROJECT NAME
GOLD Project ID
Gp0021372  
Project Name
Hydrocarboniphaga effusa AP103  
Other Names
  
Legacy ER Project ID
25482  
Legacy GOLD ID
Gi17655  
NCBI BioProject Name Hydrocarboniphaga effusa AP103
NCBI BioProject ID 158311
NCBI BioProject Accession
PRJNA158311  
NCBI Locus Tag
WQQ  
NCBI BioSample Accession
SAMN02469573  
PI Jong-Chan Chae
Added By JGI automated process on 2012-05-18 00:00:00.0
Last Modified By Auto script update processes on 2014-03-26 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Chonbuk National University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Hydrocarboniphaga effusa Strain AP103 (ATCC BAA-332) was isolated for the capability of utilizing n-alkane as a sole carbon source. Here we report the genome of the strain consists of a 5.3 Mb chromosome.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(18):5120 Genome sequence of n-alkane-degrading Hydrocarboniphaga effusa strain AP103T (ATCC BAA-332T).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Hydrocarboniphaga effusa AP103
Analysis Projects Hydrocarboniphaga effusa AP103
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0021372
Organism Name
Hydrocarboniphaga effusa AP103  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Hydrocarboniphaga  
Genus Synonyms
  
Species
Hydrocarboniphaga effusa  
Subspecies
  
Species Synonyms
  
Strain
AP103  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-332  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8619  
Exemplar Name
Hydrocarboniphaga effusa  
Taxon DOI
10.1601/tx.8619  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1172194
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Nevskiales  
NCBI Family
Sinobacteraceae  
NCBI Genus
Hydrocarboniphaga  
NCBI Species
Hydrocarboniphaga effusa  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 304563
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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