PROJECT NAME
GOLD Project ID
Gp0021114  
Project Name
Catenovulum agarivorans YM01  
Other Names
  
Legacy ER Project ID
25114  
Legacy GOLD ID
Gi17287  
NCBI BioProject Name Catenovulum agarivorans YM01
NCBI BioProject ID 158387
NCBI BioProject Accession
PRJNA158387  
NCBI Locus Tag
WSC  
NCBI BioSample Accession
SAMN02470761  
PI
Added By JGI automated process on 2012-05-18
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Ocean University of China (China)
Collaborating Institute
  
Funding Agency
  
Project Description
To investigate agarases.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(19):5484 Genome sequence of the thermostable-agarase-producing marine bacterium Catenovulum agarivorans YM01(T), which reveals the presence of a series of agarase-encoding genes.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Catenovulum agarivorans YM01
Analysis Projects Catenovulum agarivorans YM01
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0021114
Organism Name
Catenovulum agarivorans YM01  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Catenovulum  
Genus Synonyms
  
Species
Catenovulum agarivorans  
Subspecies
  
Species Synonyms
  
Strain
YM01  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 23111  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.22716  
Exemplar Name
Catenovulum agarivorans  
Taxon DOI
10.1601/tx.22716  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 659495
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Alteromonadaceae  
NCBI Genus
Catenovulum  
NCBI Species
Catenovulum agarivorans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 868337
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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