PROJECT NAME
GOLD Project ID
Gp0020651  
Project Name
Helicobacter cetorum MIT 99-5656  
Other Names
  
Legacy ER Project ID
9883  
Legacy GOLD ID
Gi16972, Gc02200  
NCBI BioProject Name Helicobacter cetorum MIT 99-5656
NCBI BioProject ID 97499
NCBI BioProject Accession
PRJNA97499  
NCBI Locus Tag
HCD  
NCBI BioSample Accession
SAMN02603198  
PI
Added By JGI automated process on 2012-04-04
Last Modified By Supratim Mukherjee on 2016-09-13
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center Washington University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of new helicobacter species from animals, their comparison to Helicobacter pylori from humans. Gastric isolate from stranded wild Atlantic white-sided dolphin  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Helicobacter cetorum MIT 99-5656
Analysis Projects Helicobacter cetorum MIT 99-5656
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
36  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0020651
Organism Name
Helicobacter cetorum MIT 99-5656  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Helicobacter  
Genus Synonyms
  
Species
Helicobacter cetorum  
Subspecies
  
Species Synonyms
  
Strain
MIT 99-5656  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10317  
Exemplar Name
Helicobacter cetorum  
Taxon DOI
10.1601/tx.10317  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1163745
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Helicobacteraceae  
NCBI Genus
Helicobacter  
NCBI Species
Helicobacter cetorum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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